Ss1.1-Pig4-TMW8016N16.5
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TTTTTAAGTAAGATTAAAAAATAAAAAATATATAAAATTTATATAGAATAAATATTTCCA
TTCATTAGACTTGTTAAAAGGAGACTGAATTAATATTTTATATAAAGATTTTGTTACACT
ATGGGAGGTTCTATCATATTATTCTGAATTGGAGAGTATATATATATATATTTTTAATAA
ACTTTATTAAGGTGAAATAATTTGAAGTTTACACATGATAATTGAAATATTTGAGTAAAA
ATGGCAAAAGTTTAAATTTTGAATGCTGTATATATTAGAATATATGGAGAATCAAGGTGT
GATGCAACTATACACAAAAAATTAATGTGAAGTTTCAAGCGGGGGGGTAAAGCTATCCTA
AGGGGCGGAAAAAAAATCTCTCCATGAAGACGCTTCACTTTATATGGTTCGACATAAGAA
TTTATAAAGTTGTTTGTCCGACTAATGGAACTGTGCTTATTAATAAAAAATCCTGACCTC
GGGTAACAGGCCGCCTTGTACCCTGTTGCTGGCTTCATGTACATACATAAGTGCATGCAC
CCATCCAAATGCTCTCTTCCCAGCATCCACTAAATAGGACCTTGACTTGGTGTAACAACC
TGATTTTGTGCCAGCTTCTCTTAAGGCTCCAAGGCTTGCAAGATAAATCGAAGACCGAGA
GTTGCTTATTTCCTCACACCTGATTTCTCCTAGAGCCATAAATACCTCCTTTTGAGAACG
AAGAAGTAGTGAAGACGGGGATTTTCTAAGTCTGATTTTTTTTACTTTTGTGGGAATAGT
GAGACAGAGTAGAAGGAAAACTGGTGCCAGGATGACTTTGAGAATTACTGCATAGTGCAT
TTTTGAAAAGAATGTTTAAAAACTGCTATCTAGAAGCAAGATTTAAAAAAAAAAAAAAGC
TTATCTGAAAGTTTAAAATGCTCTGGAACTAAAGCATAAGTATACCAATAAATCTAAAAT
AAAGGTTAGTGCTTTTAAAACTAATCTATGCTAAAGTGACACTGTTCTGGCTCTGAAGGA
TCTCCTTTGTACCAGTTTATCTGTAGATCCTCAAGAAGAAATTCTTTAGGTTGCCAAACC
ACAATTTAAGAAGTAATGCTGCTGCTGTTAATCTATTCTTAAAGGATTCGGGTGGTTAAA
ACAGAGAAACGTAGACACTATGTTACCTTCTGAAACACACTTTAAATATCATGTTTAAAA
GGCCTGATGAGAGCAAGTCCCTTCTGAGTTTCTTGGTCTGTGTCGACACTGCTCCTGACT
CGCCTCTCCTGTCCTGGAAGGAGACTTCAGTGTCCCTGTATCGTGAAGAGACCGTAGTTG
GTTTGTGAAGCACTTTGAAGATAAGCACTGTGTGACAGTGCTGAATATTATGCTTGGGGG
GGCCTCTCCTTGATTCCCTTCCCCATAATAAAGAGTTGTGTTTGGAACTGTAATAAGTTA
TGAACTGCATGGTTTAGATAATCATAAATATTTGATCAGCTGTCCCCTTGAACAAAAATC
GTACACCCCTGATTTTTTTTAAATTTTGTTGCATCTTTGTAGTAATGTAATTGTATCTTA
TGCCTGCTTTTTATATTAAAAAAATAAAAGAAATTAAGACATAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
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TTTTTAAGTAAGATTAAAAAATAAAAAATATATAAAATTTATATAGAATAAATATTTCCA
TTCATTAGACTTGTTAAAAGGAGACTGAATTAATATTTTATATAAAGATTTTGTTACACT
ATGGGAGGTTCTATCATATTATTCTGAATTGGAGAGTATATATATATATATTTTTAATAA
ACTTTATTAAGGTGAAATAATTTGAAGTTTACACATGATAATTGAAATATTTGAGTAAAA
ATGGCAAAAGTTTAAATTTTGAATGCTGTATATATTAGAATATATGGAGAATCAAGGTGT
GATGCAACTATACACAAAAAATTAATGTGAAGTTTCAAGCGGGGGGGTAAAGCTATCCTA
AGGGGCGGAAAAAAAATCTCTCCATGAAGACGCTTCACTTTATATGGTTCGACATAAGAA
TTTATAAAGTTGTTTGTCCGACTAATGGAACTGTGCTTATTAATAAAAAATCCTGACCTC
GGGTAACAGGCCGCCTTGTACCCTGTTGCTGGCTTCATGTACATACATAAGTGCATGCAC
CCATCCAAATGCTCTCTTCCCAGCATCCACTAAATAGGACCTTGACTTGGTGTAACAACC
TGATTTTGTGCCAGCTTCTCTTAAGGCTCCAAGGCTTGCAAGATAAATCGAAGACCGAGA
GTTGCTTATTTCCTCACACCTGATTTCTCCTAGAGCCATAAATACCTCCTTTTGAGAACG
AAGAAGTAGTGAAGACGGGGATTTTCTAAGTCTGATTTTTTTTACTTTTGTGGGAATAGT
GAGACAGAGTAGAAGGAAAACTGGTGCCAGGATGACTTTGAGAATTACTGCATAGTGCAT
TTTTGAAAAGAATGTTTAAAAACTGCTATCTAGAAGCAAGATTTAAAAAAAAAAAAAAGC
TTATCTGAAAGTTTAAAATGCTCTGGAACTAAAGCATAAGTATACCAATAAATCTAAAAT
AAAGGTTAGTGCTTTTAAAACTAATCTATGCTAAAGTGACACTGTTCTGGCTCTGAAGGA
TCTCCTTTGTACCAGTTTATCTGTAGATCCTCAAGAAGAAATTCTTTAGGTTGCCAAACC
ACAATTTAAGAAGTAATGCTGCTGCTGTTAATCTATTCTTAAAGGATTCGGGTGGTTAAA
ACAGAGAAACGTAGACACTATGTTACCTTCTGAAACACACTTTAAATATCATGTTTAAAA
GGCCTGATGAGAGCAAGTCCCTTCTGAGTTTCTTGGTCTGTGTCGACACTGCTCCTGACT
CGCCTCTCCTGTCCTGGAAGGAGACTTCAGTGTCCCTGTATCGTGAAGAGACCGTAGTTG
GTTTGTGAAGCACTTTGAAGATAAGCACTGTGTGACAGTGCTGAATATTATGCTTGGGGG
GGCCTCTCCTTGATTCCCTTCCCCATAATAAAGAGTTGTGTTTGGAACTGTAATAAGTTA
TGAACTGCATGGTTTAGATAATCATAAATATTTGATCAGCTGTCCCCTTGAACAAAAATC
GTACACCCCTGATTTTTTTTAAATTTTGTTGCATCTTTGTAGTAATGTAATTGTATCTTA
TGCCTGCTTTTTATATTAAAAAAATAAAAGAAATTAAGACATAAAAAAAAAAAAAAAAAA |
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273-390, - strand, RNAz p=0.855852 |
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470-587, - strand, RNAz p=0.638225 |
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824-933, - strand, RNAz p=0.637972 |
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1250-1446, - strand, RNAz p=0.762813 |
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1329-1445, - strand, RNAz p=0.979091 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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273-390, - strand, RNAz p=0.855852 |
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470-587, - strand, RNAz p=0.638225 |
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824-933, - strand, RNAz p=0.637972 |
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1250-1446, - strand, RNAz p=0.762813 |
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1329-1445, - strand, RNAz p=0.979091 |
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1-1604, gnl|bosTau2|chr11 (65387299-65388928) |
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1-1604, gnl|canFam2|chr17 (10903850-10905042) |
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1-1604, gnl|dasNov1|scaffold_32039 (7401-8531) |
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1-1604, gnl|echTel1|scaffold_228407 (5386-4165) |
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1-1604, gnl|hg17|chr2 (11270404-11271576) |
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1-1604, gnl|Hg17|chr2 (11272081-11270492) |
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1-1604, gnl|loxAfr1|scaffold_5560 (24359-23163) |
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1-1604, gnl|mm7|chr12 (17042465-17041412) |
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1-1604, gnl|Mm7|chr12 (17040919-17042403) |
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1-1604, gnl|monDom2|scaffold_1 (97058146-97056916) |
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1-1604, gnl|oryCun1|scaffold_206093 (101571-100411) |
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1-1604, gnl|panTro1|chr12 (11987409-11988578) |
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1-1604, gnl|rheMac2|chr13 (11258553-11259712) |
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1-1604, gnl|rn3|chr6 (40678794-40677756) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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1-1604, gnl|bosTau2|chr11 (65387299-65388928) |
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1-1604, gnl|canFam2|chr17 (10903850-10905042) |
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1-1604, gnl|dasNov1|scaffold_32039 (7401-8531) |
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1-1604, gnl|echTel1|scaffold_228407 (5386-4165) |
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1-1604, gnl|hg17|chr2 (11270404-11271576) |
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1-1604, gnl|Hg17|chr2 (11272081-11270492) |
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1-1604, gnl|loxAfr1|scaffold_5560 (24359-23163) |
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1-1604, gnl|mm7|chr12 (17042465-17041412) |
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1-1604, gnl|Mm7|chr12 (17040919-17042403) |
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1-1604, gnl|monDom2|scaffold_1 (97058146-97056916) |
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1-1604, gnl|oryCun1|scaffold_206093 (101571-100411) |
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1-1604, gnl|panTro1|chr12 (11987409-11988578) |
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1-1604, gnl|rheMac2|chr13 (11258553-11259712) |
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1-1604, gnl|rn3|chr6 (40678794-40677756) |
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vin (0.665115) |
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pro (0.512033) |
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tbr (0.308356) |
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sme (0.305437) |
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fce (0.271592) |
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aor (0.195274) |
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col (0.195008) |
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gul (0.177588) |
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sin (0.174948) |
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mga (0.160205) |
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spl (0.143184) |
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csk (0.140746) |
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ssp (0.13552) |
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nmm (0.132802) |
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eru (0.120048) |
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nbm (0.0993246) |
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jej (0.0989218) |
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eje (0.0988338) |
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ldo (0.0970026) |
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vin (0.665115) |
|
pro (0.512033) |
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tbr (0.308356) |
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sme (0.305437) |
|
fce (0.271592) |
|
aor (0.195274) |
|
col (0.195008) |
|
gul (0.177588) |
|
sin (0.174948) |
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mga (0.160205) |
|
spl (0.143184) |
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csk (0.140746) |
|
ssp (0.13552) |
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nmm (0.132802) |
|
eru (0.120048) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
