Non-Coding RNA Search

Ss1.1-Pig4-TMW8016N17.5

Sequence:


               
               CGTTACACTTGCTTCCTGAGTCGCTAACGCAGGTCCTTGGTTGGGTCGTTGCAGAAAGCA
CAGCCATATGTTGCAAACAGGAGATCACAGAGTTGTCCCCTAGGGACCAATTCAGACACG
TGTTCGTATCTTAAGGATGAGAACCTGTACAAGCCCCGTGTTTTTCTCTTGTGTGTAAGC
GGGTGTGCTTTTCATTTCAGGGAATTCTCTAGTCTCATCAATGGTGCCACGTTGAACATG
TCCCAAACCAAATCCCACCCCGTGCTGGGGCGGGGCGTGTCATTCCCACAGCATTCCAAA
GATGGAAACTTCTTTACTTCCCGTGAATCTCTCCTTGAAGTTATTTATATGTTCTATATA
TAAATACGTATGTACATAAGCAGATATATGGGCCTCTGTGTGGCTGAACAGTATATTTTG
TAAATAAGCACTAGTCCAATTACAGAGAGCGCGACAGAGATTTTACCTCCTGACAAGCAC
TTCAGATCAGTATTGTGTTCATTTTATTAATAAACGAATATCCGTGTCATTGTGACATGA
CGCTGGGATTGTTTTTTGGTTTTTGTTTTCCTGAAAAATAATTGCCTTTATTTTCTCTCA
TTGCCTCGCTGGTTTCAGAAGAGAGCAGTTTTATTATAAACATTGTATGGACTTTGTATA
TTAAAAGAGGGGCTCATTTCAGATTCCTGAAGAAAGAGACATTTCACTGTTATTTTTGAA
GGGGGCATCTTTTGATTTTTTTTGTTATCGTTCACACTTTCAGCGTATGTATATAAGTAA
TATTGATGGTGATATAAAAACTTTTGTTATGTGAAAATATTTAAGTCAGAAAACTGTTAA
ATAATATTACTTTTTTTTTCCCCAAACTGCTTTGTGTATTGTATATTTTTTTAAGGAAAA
AAAAAAGCCTTATTTGACTTATTCTTGTGATACTGGACTTATTATATATCCTGAGGTTTT
CCTTGAATGTCAGTGTGTATACCTGGCTGTAGTCAGTATATTCAGAATAATTGTAATTGT
GCCAGAGTTTTAAAGGTTCTGCTTTTAATGCACTTTTCTTTTATAATTTTGTATTAAAAT
ATTTTAGAAATGTTGATTAATTTTGGTGAACAAATATCTCCAAAGTTGAAATTATTGAAA
TTTAAAAAATTTTGTTCCTGCTAGGTTATTTATTTTGGTTTTAGCATTAAATGTCATCTC
AGGACGGTCTCTAAAAGGGGTGTGTTTAATTCCTGATTGTATAGAAAGCGTACTTCAGTG
AACTGTATTGGTGCACTGCCTATTTAAGTAAGGCCTTACCAAGTGAATCTAAAGCCTACT
TTTATTTTGGTTAAAGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTACACTTGCTTCCTGAGTCGCTAACGCAGGTCCTTGGTTGGGTCGTTGCAGAAAGCA
CAGCCATATGTTGCAAACAGGAGATCACAGAGTTGTCCCCTAGGGACCAATTCAGACACG
TGTTCGTATCTTAAGGATGAGAACCTGTACAAGCCCCGTGTTTTTCTCTTGTGTGTAAGC
GGGTGTGCTTTTCATTTCAGGGAATTCTCTAGTCTCATCAATGGTGCCACGTTGAACATG
TCCCAAACCAAATCCCACCCCGTGCTGGGGCGGGGCGTGTCATTCCCACAGCATTCCAAA
GATGGAAACTTCTTTACTTCCCGTGAATCTCTCCTTGAAGTTATTTATATGTTCTATATA
TAAATACGTATGTACATAAGCAGATATATGGGCCTCTGTGTGGCTGAACAGTATATTTTG
TAAATAAGCACTAGTCCAATTACAGAGAGCGCGACAGAGATTTTACCTCCTGACAAGCAC
TTCAGATCAGTATTGTGTTCATTTTATTAATAAACGAATATCCGTGTCATTGTGACATGA
CGCTGGGATTGTTTTTTGGTTTTTGTTTTCCTGAAAAATAATTGCCTTTATTTTCTCTCA
TTGCCTCGCTGGTTTCAGAAGAGAGCAGTTTTATTATAAACATTGTATGGACTTTGTATA
TTAAAAGAGGGGCTCATTTCAGATTCCTGAAGAAAGAGACATTTCACTGTTATTTTTGAA
GGGGGCATCTTTTGATTTTTTTTGTTATCGTTCACACTTTCAGCGTATGTATATAAGTAA
TATTGATGGTGATATAAAAACTTTTGTTATGTGAAAATATTTAAGTCAGAAAACTGTTAA
ATAATATTACTTTTTTTTTCCCCAAACTGCTTTGTGTATTGTATATTTTTTTAAGGAAAA
AAAAAAGCCTTATTTGACTTATTCTTGTGATACTGGACTTATTATATATCCTGAGGTTTT
CCTTGAATGTCAGTGTGTATACCTGGCTGTAGTCAGTATATTCAGAATAATTGTAATTGT
GCCAGAGTTTTAAAGGTTCTGCTTTTAATGCACTTTTCTTTTATAATTTTGTATTAAAAT
ATTTTAGAAATGTTGATTAATTTTGGTGAACAAATATCTCCAAAGTTGAAATTATTGAAA
TTTAAAAAATTTTGTTCCTGCTAGGTTATTTATTTTGGTTTTAGCATTAAATGTCATCTC
AGGACGGTCTCTAAAAGGGGTGTGTTTAATTCCTGATTGTATAGAAAGCGTACTTCAGTG
AACTGTATTGGTGCACTGCCTATTTAAGTAAGGCCTTACCAAGTGAATCTAAAGCCTACT
TTTATTTTGGTTAAAGAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               942-1344, gnl|bosTau2|chr20 (35251087-35251484)
               

               
               942-1344, gnl|Hg17|chr18 (72810955-72811334)
               

               
               942-1344, gnl|Mm7|chr18 (82945515-82945146)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               942-1344, gnl|bosTau2|chr20 (35251087-35251484)
               

               
               942-1344, gnl|Hg17|chr18 (72810955-72811334)
               

               
               942-1344, gnl|Mm7|chr18 (82945515-82945146)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               tra (0.369276)
               

               
               liv (0.292569)
               

               
               csk (0.281492)
               

               
               ece (0.229305)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               liv (0.292569)
               

               
               csk (0.281492)
               

               
               ece (0.229305)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

	942-1344, gnl\|bosTau2\|chr20 (35251087-35251484)
	942-1344, gnl\|Hg17\|chr18 (72810955-72811334)
	942-1344, gnl\|Mm7\|chr18 (82945515-82945146)

	tra (0.369276)
	liv (0.292569)
	csk (0.281492)
	ece (0.229305)
	rec (0.17307)
	fco (0.157208)
	lin (0.145603)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)