Non-Coding RNA Search

Ss1.1-Pig4-TMW8016N20.5

Sequence:


               
               AAACAAGCAAGAAATGGCTTTCTATAGCCTTCCTGAATTTGAAGAATGGAAGAGTTCTAC
ACCAAATCATAAAAAATGGAAAGTCAAATACTACAAAGGTTTGGGTACCAGCACATCAAA
AGAAGCTAAAGAATACTTTGCAGATATGAAAAGACATCGTATCCAATTCAAATATTCCGG
TCCTGAAGATGATGCTGCAATCAGCCTGGCCTTTAGCAAAAAACAGATAGATGATCGAAA
GGAATGGTTAACGCATTTCATGGAAGATAGACGGCAACGAAAGTTACTTGGCCTTCCTGA
GGATTACTTGTATGGGCAAACTACCACATCTGACATACAATGACTTCATAAACAAGGAAC
TTATCCTGTTCTCAAATTCTGATAATGAGAGATCTATCCCATCCATGGTGGATGGTTTGA
AACCGGGACAGAGAAAAGTTTTGTTTACATGTTTCAAACGAAATGACAAGCGAGAAGTGA
AGGTGGCCCAGTTAGCTGGGTCAGTAGCTGAGATGTCCTCTTATCATCATGGTGAGATGT
CACTTATGATGACCATTATCAATTTGGCTCAGAATTTTGTGGGTAGCAATAATCTGAACC
TCTTACAGCCCATTGGTCAGTTTGGTACCAGGTTGCATGGTGGCAAGGATTCTGCTAGTC
CTCGATACATCTTCACAATGCTCAGTCCTTTGGCTCGGTTGTTATTTCCACCAAAAGATG
ATCACACATTGAAGTTTTTATATGATGACAACCAACGTGTTGAACCTGAATGGTACATTC
CTATTATACCCATGGTGCTGATAAATGGCGCTGAAGGAATTGGTACTGGGTGGTCCTGCA
AAATCCCCAACTTTGATGTTCGTGAAGTTGTGAACAACATCAGACTGTTGATGGATGGAG
AAGAACCTTTGCCAATGCTTCCAAGTTACAAGAACTTCAAAGGTACTATCGAAGAGCTGG
CTCCAAATCAGTATGTGATTAGTGGTGAAGTGGCTATTCTTAATTCCACAACTATTGAAA
TCTCCGAGCTTCCCATCAGAACATGGACCCAGACGTATAAGGAGCAGGTTCTAGAGCCCA
TGTTGAATGGCACTGAGAAGACACCCCCTCTCATAACAGATTATAGGGAGTACCACACAG
ACACCACTGTGAAGTTTGTTGTGAAGATGACTGAAGAAAAACTGGCAGAGGCAGAGAGAG
TCGGACTACACAAAGTCTTCAAGCTGCAAACCAGTCTCACATGCAACTCTATGGTGCTTT
TTGATCATGTAGGCTGTTTAAAGAAATACGACACAGTGTTGGATATTCTAAGAGACTTCT
TTGAACTCAGGCTTAAATATTATGGATTAAGAAAAGAATGGCTTCTGGGAATGCTTGGTG
CTGAATCTGCTAAACTGAACAATCAGGCTCGCTTTATCTTAGAGAAAATAGATGGCAAAA
TAATCATTGAAAACAAGCCTAAGAAAGAATTAATTAAAGTTCTGATTCAGAGGGGATATG
ACTCGGATCCTGTGAAGGCTTGGAAAGAAGCCCAGCAAAAGGTTCCAGATGAAGAAGAAA
ATGAAGAAAGTGACAATGAAAAGGAAGCTGACAAGAGTGACTCTGTAGCAGATTCTGGAC
CAACCTTCAACTACCTTCTTGATATGCCTCTTTGGTATCTAACCAAGGAAAAGAAAGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACAAGCAAGAAATGGCTTTCTATAGCCTTCCTGAATTTGAAGAATGGAAGAGTTCTAC
ACCAAATCATAAAAAATGGAAAGTCAAATACTACAAAGGTTTGGGTACCAGCACATCAAA
AGAAGCTAAAGAATACTTTGCAGATATGAAAAGACATCGTATCCAATTCAAATATTCCGG
TCCTGAAGATGATGCTGCAATCAGCCTGGCCTTTAGCAAAAAACAGATAGATGATCGAAA
GGAATGGTTAACGCATTTCATGGAAGATAGACGGCAACGAAAGTTACTTGGCCTTCCTGA
GGATTACTTGTATGGGCAAACTACCACATCTGACATACAATGACTTCATAAACAAGGAAC
TTATCCTGTTCTCAAATTCTGATAATGAGAGATCTATCCCATCCATGGTGGATGGTTTGA
AACCGGGACAGAGAAAAGTTTTGTTTACATGTTTCAAACGAAATGACAAGCGAGAAGTGA
AGGTGGCCCAGTTAGCTGGGTCAGTAGCTGAGATGTCCTCTTATCATCATGGTGAGATGT
CACTTATGATGACCATTATCAATTTGGCTCAGAATTTTGTGGGTAGCAATAATCTGAACC
TCTTACAGCCCATTGGTCAGTTTGGTACCAGGTTGCATGGTGGCAAGGATTCTGCTAGTC
CTCGATACATCTTCACAATGCTCAGTCCTTTGGCTCGGTTGTTATTTCCACCAAAAGATG
ATCACACATTGAAGTTTTTATATGATGACAACCAACGTGTTGAACCTGAATGGTACATTC
CTATTATACCCATGGTGCTGATAAATGGCGCTGAAGGAATTGGTACTGGGTGGTCCTGCA
AAATCCCCAACTTTGATGTTCGTGAAGTTGTGAACAACATCAGACTGTTGATGGATGGAG
AAGAACCTTTGCCAATGCTTCCAAGTTACAAGAACTTCAAAGGTACTATCGAAGAGCTGG
CTCCAAATCAGTATGTGATTAGTGGTGAAGTGGCTATTCTTAATTCCACAACTATTGAAA
TCTCCGAGCTTCCCATCAGAACATGGACCCAGACGTATAAGGAGCAGGTTCTAGAGCCCA
TGTTGAATGGCACTGAGAAGACACCCCCTCTCATAACAGATTATAGGGAGTACCACACAG
ACACCACTGTGAAGTTTGTTGTGAAGATGACTGAAGAAAAACTGGCAGAGGCAGAGAGAG
TCGGACTACACAAAGTCTTCAAGCTGCAAACCAGTCTCACATGCAACTCTATGGTGCTTT
TTGATCATGTAGGCTGTTTAAAGAAATACGACACAGTGTTGGATATTCTAAGAGACTTCT
TTGAACTCAGGCTTAAATATTATGGATTAAGAAAAGAATGGCTTCTGGGAATGCTTGGTG
CTGAATCTGCTAAACTGAACAATCAGGCTCGCTTTATCTTAGAGAAAATAGATGGCAAAA
TAATCATTGAAAACAAGCCTAAGAAAGAATTAATTAAAGTTCTGATTCAGAGGGGATATG
ACTCGGATCCTGTGAAGGCTTGGAAAGAAGCCCAGCAAAAGGTTCCAGATGAAGAAGAAA
ATGAAGAAAGTGACAATGAAAAGGAAGCTGACAAGAGTGACTCTGTAGCAGATTCTGGAC
CAACCTTCAACTACCTTCTTGATATGCCTCTTTGGTATCTAACCAAGGAAAAGAAAGATG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               535-685, gnl|bosTau2|chr19 (34260395-34260545)
               

               
               535-685, gnl|Hg17|chr17 (35812836-35812684)
               

               
               535-685, gnl|Mm7|chr11 (99115192-99115042)
               


               
               1248-1449, gnl|bosTau2|chr19 (34263708-34263908)
               

               
               1248-1449, gnl|Hg17|chr17 (35809850-35809650)
               

               
               1248-1449, gnl|Mm7|chr11 (99112113-99111913)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               535-685, gnl|bosTau2|chr19 (34260395-34260545)
               

               
               535-685, gnl|Hg17|chr17 (35812836-35812684)
               

               
               535-685, gnl|Mm7|chr11 (99115192-99115042)
               


               
               1248-1449, gnl|bosTau2|chr19 (34263708-34263908)
               

               
               1248-1449, gnl|Hg17|chr17 (35809850-35809650)
               

               
               1248-1449, gnl|Mm7|chr11 (99112113-99111913)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               thg (0.253582)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               thg (0.253582)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)

	535-685, gnl\|bosTau2\|chr19 (34260395-34260545)
	535-685, gnl\|Hg17\|chr17 (35812836-35812684)
	535-685, gnl\|Mm7\|chr11 (99115192-99115042)

	1248-1449, gnl\|bosTau2\|chr19 (34263708-34263908)
	1248-1449, gnl\|Hg17\|chr17 (35809850-35809650)
	1248-1449, gnl\|Mm7\|chr11 (99112113-99111913)