Non-Coding RNA Search

Ss1.1-Pig4-TMW8016O02.5

Sequence:


               
               AGCTCGCGGGGTTCTCCGCGTCTGGGGGAGGAAGATGGCGTTACGGAGGGTCCGAGCTGG
GCTGCGCGAGCTCCGGCCGCTGCTGCTGCTGCTTCTGCTCCTCGGGCCATGGCCGGCGGC
GGGGCACGGCGGCAAGTACTCGCGGGAGAAGAACGAGCCCGCGCCGCCCTCGAAGCGCGA
GCCGACGGGGGAGTTCCGCATCGAGAAGCTGAACCAGCTGTGGGAGAAGGCCCAGCGGCT
GAACCTTTCCCCGGTGAGACTGTCTGAGCTCCACGCTGATCTGAAGATACAGGAACGGGA
CGAATTCAAGTGGAAGAAGATGAAGTCGGAAGGCTTGGATGAGGACGGCGAGAAGGAGGC
AAAACTGAGACGCAGCCTCAGCGTCATCCTGGCCAAGTACGGTCTGGACGGGAGAAAGGA
CACCCTGAGCACCAACTTCCTCAACCACGGCCCCGAGGACGACAGCCTGGAGGACCCCCG
GCTGGAGAAGCTGTGGCACAGGGCGAGGGCGTCTGGGAAGTTCTCCAGCGAAGAACTGGA
CAAGCTGTGGCGGGAGTTCCTGCATCACCAGGAGAAGGTCCGCGAATACAACATCCTGCT
GGAGACCCTGAGCAGGGCTGAAGAAATCCACGAGAATGTCATCAGCCCCGCGGACATGAG
CCACGTCGCGGAGGACGCCCTGCGGAGCAGACACTCCGAGCTCAAGGACAGGCTGCGGGA
CATCAGCCAGGGCCTGGACCGCCTGCAGAGGGTCAGCCACCAGGGCTACGGCGCCGAGGC
GGAGTTCGCAGAGCCGCGGGTGATGGACCTGTGGGACCTGGCCAGGGCAGCCAACTTCAC
CCAGAAGGAGCTGGAATCCTTTAAGGAAGAGCTGAAGCACTTTGAAGCCAAAATCGAAAA
GCATAACCACTATCAGAAGCAGCTAGAAATTTCTCATCAGAAGCTGAAACACGTGGAGAG
CTTTGGCGACCAGGAGCACATCAGCCGGAACAAGGAGCGCTACGCGCTGCTGGAGGAGAA
GACCAAGGAGCTGGGCTACAAGGTGAAGAAGCACTTACAGGACCTGTCCAGCCGCGTCTC
CAGAGGGCGACACAACGAGCTCTGAGGCCCCGGGAGCCCAGGGCGGGCGCAGGAGGCACC
AGCGGGCTGGGGTTCCTAAAGACGGCCCGGCCGCCCTGGGGTGGCTTGTCCGTCAGCAGA
ACCTCAGTGGAGGCATGACGGGGACCAGCCACGGGGGCCCGGGGGGAGGAGCCCCGCCGG
TGACCCCCTGCTCCCTGGCTGGCGGGCTCTGCCCTCAGCCCAGCCGACTGTCACCTCTGC
CGAAGTCACAGTTTGCATCAAAATCTTACAGATCTTCTGCTGAAAGTACTGTGTACAGAA
GTCCCTGCAAATACAGTGTTTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTCGCGGGGTTCTCCGCGTCTGGGGGAGGAAGATGGCGTTACGGAGGGTCCGAGCTGG
GCTGCGCGAGCTCCGGCCGCTGCTGCTGCTGCTTCTGCTCCTCGGGCCATGGCCGGCGGC
GGGGCACGGCGGCAAGTACTCGCGGGAGAAGAACGAGCCCGCGCCGCCCTCGAAGCGCGA
GCCGACGGGGGAGTTCCGCATCGAGAAGCTGAACCAGCTGTGGGAGAAGGCCCAGCGGCT
GAACCTTTCCCCGGTGAGACTGTCTGAGCTCCACGCTGATCTGAAGATACAGGAACGGGA
CGAATTCAAGTGGAAGAAGATGAAGTCGGAAGGCTTGGATGAGGACGGCGAGAAGGAGGC
AAAACTGAGACGCAGCCTCAGCGTCATCCTGGCCAAGTACGGTCTGGACGGGAGAAAGGA
CACCCTGAGCACCAACTTCCTCAACCACGGCCCCGAGGACGACAGCCTGGAGGACCCCCG
GCTGGAGAAGCTGTGGCACAGGGCGAGGGCGTCTGGGAAGTTCTCCAGCGAAGAACTGGA
CAAGCTGTGGCGGGAGTTCCTGCATCACCAGGAGAAGGTCCGCGAATACAACATCCTGCT
GGAGACCCTGAGCAGGGCTGAAGAAATCCACGAGAATGTCATCAGCCCCGCGGACATGAG
CCACGTCGCGGAGGACGCCCTGCGGAGCAGACACTCCGAGCTCAAGGACAGGCTGCGGGA
CATCAGCCAGGGCCTGGACCGCCTGCAGAGGGTCAGCCACCAGGGCTACGGCGCCGAGGC
GGAGTTCGCAGAGCCGCGGGTGATGGACCTGTGGGACCTGGCCAGGGCAGCCAACTTCAC
CCAGAAGGAGCTGGAATCCTTTAAGGAAGAGCTGAAGCACTTTGAAGCCAAAATCGAAAA
GCATAACCACTATCAGAAGCAGCTAGAAATTTCTCATCAGAAGCTGAAACACGTGGAGAG
CTTTGGCGACCAGGAGCACATCAGCCGGAACAAGGAGCGCTACGCGCTGCTGGAGGAGAA
GACCAAGGAGCTGGGCTACAAGGTGAAGAAGCACTTACAGGACCTGTCCAGCCGCGTCTC
CAGAGGGCGACACAACGAGCTCTGAGGCCCCGGGAGCCCAGGGCGGGCGCAGGAGGCACC
AGCGGGCTGGGGTTCCTAAAGACGGCCCGGCCGCCCTGGGGTGGCTTGTCCGTCAGCAGA
ACCTCAGTGGAGGCATGACGGGGACCAGCCACGGGGGCCCGGGGGGAGGAGCCCCGCCGG
TGACCCCCTGCTCCCTGGCTGGCGGGCTCTGCCCTCAGCCCAGCCGACTGTCACCTCTGC
CGAAGTCACAGTTTGCATCAAAATCTTACAGATCTTCTGCTGAAAGTACTGTGTACAGAA
GTCCCTGCAAATACAGTGTTTCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22038145|gb|AAM90301.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22038145|gb|AAM90301.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-151, gnl|bosTau2|chr20 (35377292-35377452)
               

               
               1-151, gnl|Hg17|chr4 (3571128-3570992)
               


               
               232-383, gnl|bosTau2|chr6 (66140789-66140940)
               

               
               232-383, gnl|Hg17|chr4 (3563754-3563603)
               

               
               232-383, gnl|Mm7|chr5 (34165106-34164955)
               


               
               620-1241, gnl|bosTau2|chr6 (66992293-66992935)
               

               
               620-1241, gnl|Hg17|chr4 (3556890-3551537)
               

               
               620-1241, gnl|Mm7|chr5 (34160251-34155758)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-151, gnl|bosTau2|chr20 (35377292-35377452)
               

               
               1-151, gnl|Hg17|chr4 (3571128-3570992)
               


               
               232-383, gnl|bosTau2|chr6 (66140789-66140940)
               

               
               232-383, gnl|Hg17|chr4 (3563754-3563603)
               

               
               232-383, gnl|Mm7|chr5 (34165106-34164955)
               


               
               620-1241, gnl|bosTau2|chr6 (66992293-66992935)
               

               
               620-1241, gnl|Hg17|chr4 (3556890-3551537)
               

               
               620-1241, gnl|Mm7|chr5 (34160251-34155758)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               cov (1.05722)
               

               
               hyp (0.42851)
               

               
               pgl (0.35545)
               

               
               lnt (0.284616)
               

               
               cst (0.280073)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (1.05722)
               

               
               hyp (0.42851)
               

               
               pgl (0.35545)
               

               
               lnt (0.284616)
               

               
               cst (0.280073)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	1-151, gnl\|bosTau2\|chr20 (35377292-35377452)
	1-151, gnl\|Hg17\|chr4 (3571128-3570992)

	232-383, gnl\|bosTau2\|chr6 (66140789-66140940)
	232-383, gnl\|Hg17\|chr4 (3563754-3563603)
	232-383, gnl\|Mm7\|chr5 (34165106-34164955)

	620-1241, gnl\|bosTau2\|chr6 (66992293-66992935)
	620-1241, gnl\|Hg17\|chr4 (3556890-3551537)
	620-1241, gnl\|Mm7\|chr5 (34160251-34155758)

	cov (1.05722)
	hyp (0.42851)
	pgl (0.35545)
	lnt (0.284616)
	cst (0.280073)
	hlv (0.278513)
	fce (0.271592)
	pla (0.267344)
	ebs (0.236602)
	fli (0.202881)
	fcc (0.197785)
	eje (0.197668)
	nlu (0.191681)
	fbs (0.175346)
	nco (0.161734)
	fat (0.147427)
	che (0.136314)
	nmm (0.132802)
	ute (0.132784)
	eep (0.122564)
	nbm (0.0993246)
	jej (0.0989218)