Ss1.1-Pig4-TMW8016O05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTCGCGGAGCCCGCACCGGCCGCGGAGCCGCTATGGGCCCGCCCGGCCCCGGGCGCCG CGGCGCGCGAGCACCGGCCAAGAGCCAGAACTGAAGCTGCGAGATGGCCGAGCAGGACCC CGGGGGCATCAGCCCCCTCCAGCAAATGGTGGCATCAGGCGCTGGGGCTGTGGTCACCTC TCTCTTCATGACCCCCCTGGATGTGGTGAAGGTCCGCCTGCAGTCTCAGCGCCCCTCGGT GGCCAGTGAGCTGATGCCTCCATCCAGACTCTGGAGCCTCTCCTACGCCAAATGGAAGTG CTTCCTGTACTGCAATGGTGTCCTAGAGCCCCTGTACCTGTGCCCGAATGGTACTCGCTG TGCCACCTGGTTTCAGGACCCCACTCGCTTCACTGGCACCGTGGATGCCTTTGTGAAGAT CGTGAGACACGAGGGCACCAGGACCCTGTGGAGTGGCCTCCCAGCCACCCTGGTGATGAC TGTGCCAGCCACTGCCGTCTACTTCACCGCCTACGACCAACTCAAGGCCTTCCTGTGTGG GCGAGCCCTGACCTCTGACCTCTATGCGCCCATGGTGGCTGGCGCCCTGGCCCGCCTGGG CACCGTGACTGTGATCAGTCCCTTGGAGCTGGTTCGAACAAAGCTGCAGGCTCAGCATCT GTCGTACCGGGAGCTGGGCACCTGCGTCCGAGCTGCTGTGGCTCAGGGCGGCTGGCGCTC ACTGTGGCTGGGCTGGGGTCCCACTGCCCTCCGCGATGTGCCCTTCTCAGCCCTGTATTG GTTCAACTACGAGCTGGTGAAGAGCTGGCTGACTGCGTTCAGGCCAAAGGACCCAACCTC CGTGGGCATCAGCTTTGTGGCTGGCGGCATCTCAGGGACGGTGGCGGCCATCCTGACTCT ACCCTTCGACGTGGTGAAGACTCAACGCCAGGTCGCGCTTGGAGCGGTGGAGGCTGTGAG AGTGACGCCCCCGCGCGCCATCTCCACCTGGCTGCTGCTGCAGAGGATCCGGGCCGAGTC GGGCACCAGGGGGCTCTTTGCAGGCTTCCTCCCGAGGATCGTCAAGGCCGCCCCCTCCTG CGCCATCATGATCAGCACGTATGAGTTCGGCAAAAGCTTCTTCCAGAGGCTCAACCGGGA ACAGCCTCTGGGCCCTTGAAAGGAGTGAGGGGACAGGGACCCCATCTCTTCCACGGGTGG GGTGAGGCAGGAGGAGACTGAGCCAAGTGCCTTTTCCTCAGCACTGAGGGGAGGGGCCCC GTTTCTCTTTCCTCTCCGCTCTGAGCCCCAGGCCCCCCACCCCAGACCACTTTCTTCCTG CTGCTCCCCATTCCCCAGCCCCGTGAATCATCTCTCCCCCCCACGTTCAAGACCAAATCT GCTAACTACCCGCACCCCCCATTCCCTGGTGTATCTGCTGTAGCCGGGCCTGCCCCTGAA AGCCTGCGGGCCTGGCGTGGTCTGCACCCGCCTCTGTTAATTCCTTGAGTCTAAAGATGA TAAACTTCTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTCGCGGAGCCCGCACCGGCCGCGGAGCCGCTATGGGCCCGCCCGGCCCCGGGCGCCG CGGCGCGCGAGCACCGGCCAAGAGCCAGAACTGAAGCTGCGAGATGGCCGAGCAGGACCC CGGGGGCATCAGCCCCCTCCAGCAAATGGTGGCATCAGGCGCTGGGGCTGTGGTCACCTC TCTCTTCATGACCCCCCTGGATGTGGTGAAGGTCCGCCTGCAGTCTCAGCGCCCCTCGGT GGCCAGTGAGCTGATGCCTCCATCCAGACTCTGGAGCCTCTCCTACGCCAAATGGAAGTG CTTCCTGTACTGCAATGGTGTCCTAGAGCCCCTGTACCTGTGCCCGAATGGTACTCGCTG TGCCACCTGGTTTCAGGACCCCACTCGCTTCACTGGCACCGTGGATGCCTTTGTGAAGAT CGTGAGACACGAGGGCACCAGGACCCTGTGGAGTGGCCTCCCAGCCACCCTGGTGATGAC TGTGCCAGCCACTGCCGTCTACTTCACCGCCTACGACCAACTCAAGGCCTTCCTGTGTGG GCGAGCCCTGACCTCTGACCTCTATGCGCCCATGGTGGCTGGCGCCCTGGCCCGCCTGGG CACCGTGACTGTGATCAGTCCCTTGGAGCTGGTTCGAACAAAGCTGCAGGCTCAGCATCT GTCGTACCGGGAGCTGGGCACCTGCGTCCGAGCTGCTGTGGCTCAGGGCGGCTGGCGCTC ACTGTGGCTGGGCTGGGGTCCCACTGCCCTCCGCGATGTGCCCTTCTCAGCCCTGTATTG GTTCAACTACGAGCTGGTGAAGAGCTGGCTGACTGCGTTCAGGCCAAAGGACCCAACCTC CGTGGGCATCAGCTTTGTGGCTGGCGGCATCTCAGGGACGGTGGCGGCCATCCTGACTCT ACCCTTCGACGTGGTGAAGACTCAACGCCAGGTCGCGCTTGGAGCGGTGGAGGCTGTGAG AGTGACGCCCCCGCGCGCCATCTCCACCTGGCTGCTGCTGCAGAGGATCCGGGCCGAGTC GGGCACCAGGGGGCTCTTTGCAGGCTTCCTCCCGAGGATCGTCAAGGCCGCCCCCTCCTG CGCCATCATGATCAGCACGTATGAGTTCGGCAAAAGCTTCTTCCAGAGGCTCAACCGGGA ACAGCCTCTGGGCCCTTGAAAGGAGTGAGGGGACAGGGACCCCATCTCTTCCACGGGTGG GGTGAGGCAGGAGGAGACTGAGCCAAGTGCCTTTTCCTCAGCACTGAGGGGAGGGGCCCC GTTTCTCTTTCCTCTCCGCTCTGAGCCCCAGGCCCCCCACCCCAGACCACTTTCTTCCTG CTGCTCCCCATTCCCCAGCCCCGTGAATCATCTCTCCCCCCCACGTTCAAGACCAAATCT GCTAACTACCCGCACCCCCCATTCCCTGGTGTATCTGCTGTAGCCGGGCCTGCCCCTGAA AGCCTGCGGGCCTGGCGTGGTCTGCACCCGCCTCTGTTAATTCCTTGAGTCTAAAGATGA TAAACTTCTTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1158-1292, + strand, RNAz p=0.988602 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1158-1292, + strand, RNAz p=0.988602 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of CR605651, + |
| Aligned organism(s): 84 entry(ies) | More info |
| Aligned organism(s): 84 entry(ies) | Help | Less info |
| 86-188, gnl|bosTau2|chr19 (37985633-37985735) | |
| 86-188, gnl|canFam2|chr9 (22421822-22421753) | |
| 86-188, gnl|canFam2|chr9 (44108348-44108451) | |
| 86-188, gnl|danRer3|chr16 (32471848-32471779) | |
| 86-188, gnl|dasNov1|scaffold_26043 (32717-32760) | |
| 86-188, gnl|dasNov1|scaffold_7561 (49343-49443) | |
| 86-188, gnl|echTel1|scaffold_39793 (793-730) | |
| 86-188, gnl|echTel1|scaffold_39793 (794-692) | |
| 86-188, gnl|fr1|chrUn (188806016-188805947) | |
| 86-188, gnl|hg17|chr12 (10595460-10595554) | |
| 86-188, gnl|hg17|chr17 (39756367-39756436) | |
| 86-188, gnl|Hg17|chr17 (39756474-39756372) | |
| 86-188, gnl|mm7|chr11 (102515589-102515658) | |
| 86-188, gnl|mm7|chr11 (102515594-102515697) | |
| 86-188, gnl|Mm7|chr11 (102515696-102515594) | |
| 86-188, gnl|monDom2|scaffold_18 (42418032-42417969) | |
| 86-188, gnl|oryCun1|scaffold_167717 (707-776) | |
| 86-188, gnl|oryCun1|scaffold_167717 (712-815) | |
| 86-188, gnl|panTro1|chr19 (42969979-42970048) | |
| 86-188, gnl|panTro1|chrUn_random (36871433-36871527) | |
| 86-188, gnl|rheMac2|chr11 (10701217-10701311) | |
| 86-188, gnl|rheMac2|chr16 (54416555-54416624) | |
| 86-188, gnl|rn3|chr10 (91528657-91528726) | |
| 86-188, gnl|rn3|chrX (26736333-26736230) | |
| 86-188, gnl|tetNig1|chr8 (7557274-7557343) | |
| 86-188, gnl|xenTro1|scaffold_1230 (35235-35301) | |
| 278-404, gnl|bosTau2|chr19 (37986333-37986458) | |
| 278-404, gnl|canFam2|chr9 (22422547-22422410) | |
| 278-404, gnl|canFam2|chr9 (44108111-44108243) | |
| 278-404, gnl|danRer3|chr3 (24077562-24077694) | |
| 278-404, gnl|dasNov1|scaffold_22663 (5267-5404) | |
| 278-404, gnl|dasNov1|scaffold_7561 (49112-49248) | |
| 278-404, gnl|echTel1|scaffold_314565 (3635-3772) | |
| 278-404, gnl|echTel1|scaffold_39793 (1031-897) | |
| 278-404, gnl|fr1|chrUn (62390035-62390148) | |
| 278-404, gnl|hg17|chr12 (10595242-10595364) | |
| 278-404, gnl|hg17|chr17 (39755307-39755444) | |
| 278-404, gnl|Hg17|chr17 (39755437-39755312) | |
| 278-404, gnl|mm7|chr11 (102514726-102514863) | |
| 278-404, gnl|mm7|chr11 (102514732-102514866) | |
| 278-404, gnl|Mm7|chr11 (102514856-102514731) | |
| 278-404, gnl|monDom2|scaffold_4 (34444742-34444867) | |
| 278-404, gnl|oryCun1|scaffold_167717 (194-327) | |
| 278-404, gnl|oryCun1|scaffold_167717 (200-346) | |
| 278-404, gnl|panTro1|chr19 (42968899-42969036) | |
| 278-404, gnl|panTro1|chrUn_random (36871215-36871337) | |
| 278-404, gnl|rheMac2|chr11 (10701000-10701121) | |
| 278-404, gnl|rheMac2|chr16 (54415496-54415633) | |
| 278-404, gnl|rn3|chr10 (91527948-91528096) | |
| 278-404, gnl|rn3|chrX (26736566-26736438) | |
| 278-404, gnl|tetNig1|chr8 (7556693-7556806) | |
| 278-404, gnl|xenTro1|scaffold_1230 (33910-34047) | |
| 591-770, gnl|bosTau2|chr19 (37987524-37987704) | |
| 591-770, gnl|canFam2|chr9 (44107934-44107804) | |
| 591-770, gnl|canFam2|chr9 (22423578-22423391) | |
| 591-770, gnl|danRer3|chr16 (32474846-32474657) | |
| 591-770, gnl|danRer3|chr3 (24072368-24072243) | |
| 591-770, gnl|dasNov1|scaffold_22663 (4242-4430) | |
| 591-770, gnl|dasNov1|scaffold_26043 (32327-32202) | |
| 591-770, gnl|echTel1|scaffold_314565 (2828-3015) | |
| 591-770, gnl|echTel1|scaffold_39793 (1222-1347) | |
| 591-770, gnl|fr1|chrUn (188807526-188807651) | |
| 591-770, gnl|fr1|chrUn (62389057-62389234) | |
| 591-770, gnl|hg17|chr1 (199497314-199497441) | |
| 591-770, gnl|hg17|chr17 (39753941-39754129) | |
| 591-770, gnl|Hg17|chr17 (39754132-39753952) | |
| 591-770, gnl|mm7|chr11 (102513662-102513537) | |
| 591-770, gnl|mm7|chr11 (102513480-102513667) | |
| 591-770, gnl|Mm7|chr11 (102513677-102513491) | |
| 591-770, gnl|monDom2|scaffold_18 (42420206-42420015) | |
| 591-770, gnl|monDom2|scaffold_4 (34444611-34444486) | |
| 591-770, gnl|oryCun1|scaffold_133021 (4956-4846) | |
| 591-770, gnl|oryCun1|scaffold_133021 (4791-4970) | |
| 591-770, gnl|panTro1|chr1 (182283577-182283686) | |
| 591-770, gnl|panTro1|chr19 (42967536-42967724) | |
| 591-770, gnl|rheMac2|chr1 (167708388-167708262) | |
| 591-770, gnl|rheMac2|chr16 (54414109-54414297) | |
| 591-770, gnl|rn3|chr10 (91526539-91526726) | |
| 591-770, gnl|rn3|chr3 (68090564-68090439) | |
| 591-770, gnl|tetNig1|chr3 (14523376-14523501) | |
| 591-770, gnl|tetNig1|chr8 (7555710-7555894) | |
| 591-770, gnl|xenTro1|scaffold_1230 (31403-31585) | |
| 1039-1292, gnl|bosTau2|chr19 (37988669-37988920) | |
| 1039-1292, gnl|Hg17|chr17 (39753015-39752762) |
| Aligned organism(s): 84 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 86-188, gnl|bosTau2|chr19 (37985633-37985735) | |
| 86-188, gnl|canFam2|chr9 (22421822-22421753) | |
| 86-188, gnl|canFam2|chr9 (44108348-44108451) | |
| 86-188, gnl|danRer3|chr16 (32471848-32471779) | |
| 86-188, gnl|dasNov1|scaffold_26043 (32717-32760) | |
| 86-188, gnl|dasNov1|scaffold_7561 (49343-49443) | |
| 86-188, gnl|echTel1|scaffold_39793 (793-730) | |
| 86-188, gnl|echTel1|scaffold_39793 (794-692) | |
| 86-188, gnl|fr1|chrUn (188806016-188805947) | |
| 86-188, gnl|hg17|chr12 (10595460-10595554) | |
| 86-188, gnl|hg17|chr17 (39756367-39756436) | |
| 86-188, gnl|Hg17|chr17 (39756474-39756372) | |
| 86-188, gnl|mm7|chr11 (102515589-102515658) | |
| 86-188, gnl|mm7|chr11 (102515594-102515697) | |
| 86-188, gnl|Mm7|chr11 (102515696-102515594) | |
| 86-188, gnl|monDom2|scaffold_18 (42418032-42417969) | |
| 86-188, gnl|oryCun1|scaffold_167717 (707-776) | |
| 86-188, gnl|oryCun1|scaffold_167717 (712-815) | |
| 86-188, gnl|panTro1|chr19 (42969979-42970048) | |
| 86-188, gnl|panTro1|chrUn_random (36871433-36871527) | |
| 86-188, gnl|rheMac2|chr11 (10701217-10701311) | |
| 86-188, gnl|rheMac2|chr16 (54416555-54416624) | |
| 86-188, gnl|rn3|chr10 (91528657-91528726) | |
| 86-188, gnl|rn3|chrX (26736333-26736230) | |
| 86-188, gnl|tetNig1|chr8 (7557274-7557343) | |
| 86-188, gnl|xenTro1|scaffold_1230 (35235-35301) | |
| 278-404, gnl|bosTau2|chr19 (37986333-37986458) | |
| 278-404, gnl|canFam2|chr9 (22422547-22422410) | |
| 278-404, gnl|canFam2|chr9 (44108111-44108243) | |
| 278-404, gnl|danRer3|chr3 (24077562-24077694) | |
| 278-404, gnl|dasNov1|scaffold_22663 (5267-5404) | |
| 278-404, gnl|dasNov1|scaffold_7561 (49112-49248) | |
| 278-404, gnl|echTel1|scaffold_314565 (3635-3772) | |
| 278-404, gnl|echTel1|scaffold_39793 (1031-897) | |
| 278-404, gnl|fr1|chrUn (62390035-62390148) | |
| 278-404, gnl|hg17|chr12 (10595242-10595364) | |
| 278-404, gnl|hg17|chr17 (39755307-39755444) | |
| 278-404, gnl|Hg17|chr17 (39755437-39755312) | |
| 278-404, gnl|mm7|chr11 (102514726-102514863) | |
| 278-404, gnl|mm7|chr11 (102514732-102514866) | |
| 278-404, gnl|Mm7|chr11 (102514856-102514731) | |
| 278-404, gnl|monDom2|scaffold_4 (34444742-34444867) | |
| 278-404, gnl|oryCun1|scaffold_167717 (194-327) | |
| 278-404, gnl|oryCun1|scaffold_167717 (200-346) | |
| 278-404, gnl|panTro1|chr19 (42968899-42969036) | |
| 278-404, gnl|panTro1|chrUn_random (36871215-36871337) | |
| 278-404, gnl|rheMac2|chr11 (10701000-10701121) | |
| 278-404, gnl|rheMac2|chr16 (54415496-54415633) | |
| 278-404, gnl|rn3|chr10 (91527948-91528096) | |
| 278-404, gnl|rn3|chrX (26736566-26736438) | |
| 278-404, gnl|tetNig1|chr8 (7556693-7556806) | |
| 278-404, gnl|xenTro1|scaffold_1230 (33910-34047) | |
| 591-770, gnl|bosTau2|chr19 (37987524-37987704) | |
| 591-770, gnl|canFam2|chr9 (44107934-44107804) | |
| 591-770, gnl|canFam2|chr9 (22423578-22423391) | |
| 591-770, gnl|danRer3|chr16 (32474846-32474657) | |
| 591-770, gnl|danRer3|chr3 (24072368-24072243) | |
| 591-770, gnl|dasNov1|scaffold_22663 (4242-4430) | |
| 591-770, gnl|dasNov1|scaffold_26043 (32327-32202) | |
| 591-770, gnl|echTel1|scaffold_314565 (2828-3015) | |
| 591-770, gnl|echTel1|scaffold_39793 (1222-1347) | |
| 591-770, gnl|fr1|chrUn (188807526-188807651) | |
| 591-770, gnl|fr1|chrUn (62389057-62389234) | |
| 591-770, gnl|hg17|chr1 (199497314-199497441) | |
| 591-770, gnl|hg17|chr17 (39753941-39754129) | |
| 591-770, gnl|Hg17|chr17 (39754132-39753952) | |
| 591-770, gnl|mm7|chr11 (102513662-102513537) | |
| 591-770, gnl|mm7|chr11 (102513480-102513667) | |
| 591-770, gnl|Mm7|chr11 (102513677-102513491) | |
| 591-770, gnl|monDom2|scaffold_18 (42420206-42420015) | |
| 591-770, gnl|monDom2|scaffold_4 (34444611-34444486) | |
| 591-770, gnl|oryCun1|scaffold_133021 (4956-4846) | |
| 591-770, gnl|oryCun1|scaffold_133021 (4791-4970) | |
| 591-770, gnl|panTro1|chr1 (182283577-182283686) | |
| 591-770, gnl|panTro1|chr19 (42967536-42967724) | |
| 591-770, gnl|rheMac2|chr1 (167708388-167708262) | |
| 591-770, gnl|rheMac2|chr16 (54414109-54414297) | |
| 591-770, gnl|rn3|chr10 (91526539-91526726) | |
| 591-770, gnl|rn3|chr3 (68090564-68090439) | |
| 591-770, gnl|tetNig1|chr3 (14523376-14523501) | |
| 591-770, gnl|tetNig1|chr8 (7555710-7555894) | |
| 591-770, gnl|xenTro1|scaffold_1230 (31403-31585) | |
| 1039-1292, gnl|bosTau2|chr19 (37988669-37988920) | |
| 1039-1292, gnl|Hg17|chr17 (39753015-39752762) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| cov (1.71799) | |
| cag (0.604778) | |
| fce (0.543183) | |
| elu (0.385356) | |
| ill (0.351185) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| jej (0.296765) | |
| med (0.232504) | |
| nms (0.213858) | |
| nbm (0.198649) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| eje (0.0988338) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (1.71799) | |
| cag (0.604778) | |
| fce (0.543183) | |
| elu (0.385356) | |
| ill (0.351185) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| jej (0.296765) | |
| med (0.232504) | |
| nms (0.213858) | |
| nbm (0.198649) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| eje (0.0988338) |