Ss1.1-Pig4-TMW8016O18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGCCGAGATCCACTCCAGGCCACAGAGCAGCCGCCCGGTGCTGCTGAGCAAGATCGA GGGGCACCAGGACGCTGTCACGGCCGCGCAGCTTATCCCCAAGGAGGACGGCGTGATCAC TGCCAGCGAGGACAGAACTATCCGAGTATGGCTGAAAAGAGACAGCGGTCAGTACTGGCC CAGCATTTACCACACGATGGCTTCTCCTTGCTCTGCTATGGCTTACCATCATGATAGCAG ACGGATATTTGTGGGCCAGGATAACGGAGCCGTGATGGAATTTCATATTTCTGAAGATTT TAATAAAATGAACTTTATCAAGACCTACCCAGCTCATCAGAACCGGGTGTCTGCGATTAT CTTCAGCCTGGCTGCGGAGTGGGTGATCAGCACTGGCCACGACAAGTGTGTCAGCTGGAT GTGCACCCGCAGTGGAAACATGCTCGGGAAGCACTTCTTCACTTCCTGGGCTTCGTGTTT ACAATATGATTTTGATACTCAGTATGCTTTTGTTGGTGACTATTCTGGACAGATCACCTT GCTGAAGCTCGAACAGAACACCTGTTCAGTTATTACAACCCTTAAAGGACATGAAGGTGG CATCGCCTGCCTCTGGTGGGAGCCCATTCAGCGGTTCTTGCTCCAGGGAGCCTCTGACAA CAGCATCATCATGTGGGACATCGGAGGAAGGAAAGGGCTGGTCTCCTGTTCCTCGGACGG TCATGACAGGGTGTGGAACATGGACGTTAGCAGAGAGGAGGCTCCTCAGTGGTTAGAAAG TGATTCTTGTCAGAAGTGTGAGCAGCCCTTTTTCTGGAATATAAAGCAGATGTGGGACAC GAAGACACTGGGGTTGAGACAGCATCACTGCAGGAAGTGCGGGCAGGCTGTCTGTGGGAA GTGCAGCAGCAAGCGCTCCAGCTACCCTGTCATGGGCTTCGAGTTCCAGGTCCGCGTGTG TGATTCTTGCTACGACTCCATCAAGGACGAGGATCGGACTTCTCTAGCAACCTTTCATGA AGGAAAACATAACATCTCCCACATGTCCATGGACGTCGCTAGGGGCCTGATGGTGACCTG CGGGACCGACCGCGTGGTGAAGATTTGGGACATGACGCCCGTGGTGGGCTGCAGCCTGGC GACCGGCTTCTCTCCACATTGATCCGGGAGCCTGACGGGGTCTGCGCCTTCCCAGCAGCC GCCTTCACCACATGCGATGCTTCCCCGTAGCTCCACAGTCGCTGTCATGTGAATGGACAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGCCGAGATCCACTCCAGGCCACAGAGCAGCCGCCCGGTGCTGCTGAGCAAGATCGA GGGGCACCAGGACGCTGTCACGGCCGCGCAGCTTATCCCCAAGGAGGACGGCGTGATCAC TGCCAGCGAGGACAGAACTATCCGAGTATGGCTGAAAAGAGACAGCGGTCAGTACTGGCC CAGCATTTACCACACGATGGCTTCTCCTTGCTCTGCTATGGCTTACCATCATGATAGCAG ACGGATATTTGTGGGCCAGGATAACGGAGCCGTGATGGAATTTCATATTTCTGAAGATTT TAATAAAATGAACTTTATCAAGACCTACCCAGCTCATCAGAACCGGGTGTCTGCGATTAT CTTCAGCCTGGCTGCGGAGTGGGTGATCAGCACTGGCCACGACAAGTGTGTCAGCTGGAT GTGCACCCGCAGTGGAAACATGCTCGGGAAGCACTTCTTCACTTCCTGGGCTTCGTGTTT ACAATATGATTTTGATACTCAGTATGCTTTTGTTGGTGACTATTCTGGACAGATCACCTT GCTGAAGCTCGAACAGAACACCTGTTCAGTTATTACAACCCTTAAAGGACATGAAGGTGG CATCGCCTGCCTCTGGTGGGAGCCCATTCAGCGGTTCTTGCTCCAGGGAGCCTCTGACAA CAGCATCATCATGTGGGACATCGGAGGAAGGAAAGGGCTGGTCTCCTGTTCCTCGGACGG TCATGACAGGGTGTGGAACATGGACGTTAGCAGAGAGGAGGCTCCTCAGTGGTTAGAAAG TGATTCTTGTCAGAAGTGTGAGCAGCCCTTTTTCTGGAATATAAAGCAGATGTGGGACAC GAAGACACTGGGGTTGAGACAGCATCACTGCAGGAAGTGCGGGCAGGCTGTCTGTGGGAA GTGCAGCAGCAAGCGCTCCAGCTACCCTGTCATGGGCTTCGAGTTCCAGGTCCGCGTGTG TGATTCTTGCTACGACTCCATCAAGGACGAGGATCGGACTTCTCTAGCAACCTTTCATGA AGGAAAACATAACATCTCCCACATGTCCATGGACGTCGCTAGGGGCCTGATGGTGACCTG CGGGACCGACCGCGTGGTGAAGATTTGGGACATGACGCCCGTGGTGGGCTGCAGCCTGGC GACCGGCTTCTCTCCACATTGATCCGGGAGCCTGACGGGGTCTGCGCCTTCCCAGCAGCC GCCTTCACCACATGCGATGCTTCCCCGTAGCTCCACAGTCGCTGTCATGTGAATGGACAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 1-135, gnl|bosTau2|chr2 (68222905-68222771) | |
| 1-135, gnl|danRer3|chr16 (20384588-20384692) | |
| 1-135, gnl|dasNov1|scaffold_61831 (8986-8868) | |
| 1-135, gnl|echTel1|scaffold_293108 (1246-1364) | |
| 1-135, gnl|fr1|chrUn (212983045-212983149) | |
| 1-135, gnl|galGal2|chr1 (162260458-162260562) | |
| 1-135, gnl|hg17|chr13 (51056812-51056930) | |
| 1-135, gnl|Hg17|chr2 (224635504-224635370) | |
| 1-135, gnl|loxAfr1|scaffold_50022 (5186-5061) | |
| 1-135, gnl|Mm7|chr1 (79975970-79975836) | |
| 1-135, gnl|mm7|chr14 (57702705-57702820) | |
| 1-135, gnl|monDom2|scaffold_15 (54804570-54804452) | |
| 1-135, gnl|oryCun1|scaffold_206413 (80870-80988) | |
| 1-135, gnl|panTro1|chr14_random (17210064-17210182) | |
| 1-135, gnl|rheMac2|chr17 (30401367-30401485) | |
| 1-135, gnl|rn3|chr15 (42111846-42111961) | |
| 1-135, gnl|tetNig1|chr2 (18294713-18294823) | |
| 1-135, gnl|xenTro1|scaffold_223 (1271673-1271554) | |
| 330-502, gnl|bosTau2|chr2 (68186727-68186555) | |
| 330-502, gnl|canFam2|chr22 (3283705-3283541) | |
| 330-502, gnl|danRer3|chr16 (20389625-20389790) | |
| 330-502, gnl|dasNov1|scaffold_8147 (3415-3251) | |
| 330-502, gnl|fr1|chrUn (120496930-120496766) | |
| 330-502, gnl|galGal2|chr1 (162313473-162313637) | |
| 330-502, gnl|hg17|chr13 (51191330-51191494) | |
| 330-502, gnl|Hg17|chr2 (224591558-224591355) | |
| 330-502, gnl|loxAfr1|scaffold_13569 (42352-42188) | |
| 330-502, gnl|Mm7|chr1 (79940015-79939843) | |
| 330-502, gnl|mm7|chr14 (57794102-57794266) | |
| 330-502, gnl|monDom2|scaffold_15 (54659347-54659183) | |
| 330-502, gnl|oryCun1|scaffold_204605 (52034-51870) | |
| 330-502, gnl|panTro1|chr14_random (17344632-17344796) | |
| 330-502, gnl|rheMac2|chr17 (30528063-30528227) | |
| 330-502, gnl|rn3|chr15 (42206561-42206725) | |
| 330-502, gnl|tetNig1|chr2 (18296929-18297090) | |
| 330-502, gnl|xenTro1|scaffold_223 (1251246-1251082) | |
| 595-712, gnl|bosTau2|chr2 (68182634-68182516) | |
| 595-712, gnl|Hg17|chr2 (224585854-224585736) | |
| 595-712, gnl|Mm7|chr1 (79935740-79935622) | |
| 860-993, gnl|bosTau2|chr12 (10995080-10995213) | |
| 860-993, gnl|canFam2|chr22 (3251296-3251168) | |
| 860-993, gnl|danRer3|chr16 (20393274-20393403) | |
| 860-993, gnl|dasNov1|scaffold_1110 (1119-996) | |
| 860-993, gnl|echTel1|scaffold_284178 (116406-116276) | |
| 860-993, gnl|fr1|chrUn (120495719-120495602) | |
| 860-993, gnl|galGal2|chr1 (162323529-162323647) | |
| 860-993, gnl|hg17|chr13 (51228450-51228579) | |
| 860-993, gnl|Hg17|chr13 (51228466-51228599) | |
| 860-993, gnl|loxAfr1|scaffold_124658 (4199-4319) | |
| 860-993, gnl|mm7|chr14 (57816874-57817001) | |
| 860-993, gnl|Mm7|chr14 (57816888-57817021) | |
| 860-993, gnl|monDom2|scaffold_15 (54622456-54622327) | |
| 860-993, gnl|oryCun1|scaffold_204605 (12202-12074) | |
| 860-993, gnl|panTro1|chr14_random (17381714-17381843) | |
| 860-993, gnl|rheMac2|chr17 (30567031-30567160) | |
| 860-993, gnl|rn3|chr15 (42229905-42230037) | |
| 860-993, gnl|tetNig1|chr16 (7142746-7142863) | |
| 860-993, gnl|xenTro1|scaffold_223 (1243876-1243762) | |
| 1098-1260, gnl|bosTau2|chr2 (68171430-68171268) | |
| 1098-1260, gnl|Hg17|chr2 (224568957-224568797) | |
| 1098-1260, gnl|Mm7|chr1 (79926313-79926149) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-135, gnl|bosTau2|chr2 (68222905-68222771) | |
| 1-135, gnl|danRer3|chr16 (20384588-20384692) | |
| 1-135, gnl|dasNov1|scaffold_61831 (8986-8868) | |
| 1-135, gnl|echTel1|scaffold_293108 (1246-1364) | |
| 1-135, gnl|fr1|chrUn (212983045-212983149) | |
| 1-135, gnl|galGal2|chr1 (162260458-162260562) | |
| 1-135, gnl|hg17|chr13 (51056812-51056930) | |
| 1-135, gnl|Hg17|chr2 (224635504-224635370) | |
| 1-135, gnl|loxAfr1|scaffold_50022 (5186-5061) | |
| 1-135, gnl|Mm7|chr1 (79975970-79975836) | |
| 1-135, gnl|mm7|chr14 (57702705-57702820) | |
| 1-135, gnl|monDom2|scaffold_15 (54804570-54804452) | |
| 1-135, gnl|oryCun1|scaffold_206413 (80870-80988) | |
| 1-135, gnl|panTro1|chr14_random (17210064-17210182) | |
| 1-135, gnl|rheMac2|chr17 (30401367-30401485) | |
| 1-135, gnl|rn3|chr15 (42111846-42111961) | |
| 1-135, gnl|tetNig1|chr2 (18294713-18294823) | |
| 1-135, gnl|xenTro1|scaffold_223 (1271673-1271554) | |
| 330-502, gnl|bosTau2|chr2 (68186727-68186555) | |
| 330-502, gnl|canFam2|chr22 (3283705-3283541) | |
| 330-502, gnl|danRer3|chr16 (20389625-20389790) | |
| 330-502, gnl|dasNov1|scaffold_8147 (3415-3251) | |
| 330-502, gnl|fr1|chrUn (120496930-120496766) | |
| 330-502, gnl|galGal2|chr1 (162313473-162313637) | |
| 330-502, gnl|hg17|chr13 (51191330-51191494) | |
| 330-502, gnl|Hg17|chr2 (224591558-224591355) | |
| 330-502, gnl|loxAfr1|scaffold_13569 (42352-42188) | |
| 330-502, gnl|Mm7|chr1 (79940015-79939843) | |
| 330-502, gnl|mm7|chr14 (57794102-57794266) | |
| 330-502, gnl|monDom2|scaffold_15 (54659347-54659183) | |
| 330-502, gnl|oryCun1|scaffold_204605 (52034-51870) | |
| 330-502, gnl|panTro1|chr14_random (17344632-17344796) | |
| 330-502, gnl|rheMac2|chr17 (30528063-30528227) | |
| 330-502, gnl|rn3|chr15 (42206561-42206725) | |
| 330-502, gnl|tetNig1|chr2 (18296929-18297090) | |
| 330-502, gnl|xenTro1|scaffold_223 (1251246-1251082) | |
| 595-712, gnl|bosTau2|chr2 (68182634-68182516) | |
| 595-712, gnl|Hg17|chr2 (224585854-224585736) | |
| 595-712, gnl|Mm7|chr1 (79935740-79935622) | |
| 860-993, gnl|bosTau2|chr12 (10995080-10995213) | |
| 860-993, gnl|canFam2|chr22 (3251296-3251168) | |
| 860-993, gnl|danRer3|chr16 (20393274-20393403) | |
| 860-993, gnl|dasNov1|scaffold_1110 (1119-996) | |
| 860-993, gnl|echTel1|scaffold_284178 (116406-116276) | |
| 860-993, gnl|fr1|chrUn (120495719-120495602) | |
| 860-993, gnl|galGal2|chr1 (162323529-162323647) | |
| 860-993, gnl|hg17|chr13 (51228450-51228579) | |
| 860-993, gnl|Hg17|chr13 (51228466-51228599) | |
| 860-993, gnl|loxAfr1|scaffold_124658 (4199-4319) | |
| 860-993, gnl|mm7|chr14 (57816874-57817001) | |
| 860-993, gnl|Mm7|chr14 (57816888-57817021) | |
| 860-993, gnl|monDom2|scaffold_15 (54622456-54622327) | |
| 860-993, gnl|oryCun1|scaffold_204605 (12202-12074) | |
| 860-993, gnl|panTro1|chr14_random (17381714-17381843) | |
| 860-993, gnl|rheMac2|chr17 (30567031-30567160) | |
| 860-993, gnl|rn3|chr15 (42229905-42230037) | |
| 860-993, gnl|tetNig1|chr16 (7142746-7142863) | |
| 860-993, gnl|xenTro1|scaffold_223 (1243876-1243762) | |
| 1098-1260, gnl|bosTau2|chr2 (68171430-68171268) | |
| 1098-1260, gnl|Hg17|chr2 (224568957-224568797) | |
| 1098-1260, gnl|Mm7|chr1 (79926313-79926149) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.204499) | |
| pgl (0.118483) |