Ss1.1-Pig4-TMW8016P08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGACCTGTGTGGAGGGGCACTGCCAGTGCGTGGGGAGCTTCTGGCGGGGCGCTGCCTGC GACGAGCTGGACTGTGGCCCCGCCAACTGCAGCCAGCACGGGCTCTGCACGGAGACCGGC TGCCGCTGCGAAGCTGGATGGACAGGGTCCAACTGCAGTGAAGCTTGCACCAACGGCTTC TTTGGGGAGGACTGTGCCAAGAAGTGCCAGTGTCATAATGGAGCCACCTGTGACCCCATA CAGGGGACCTGTGCCTGTCCCCCTGGCTTCACTGGAGACACGTGTGTGCAGGAGTGTCCC CTCGGCTGGTACGGGCCAGGCTGCCAGAGCCCTTGCAAGTGTGAGCACCAGTGTCCCTGT GACCCGCAGACAGGCAACTGCAGCCTCACCTGGTCACCCACACTGAACAGCCTCCTCTCC CAAGTGAAGCAGTGTCTCCCGCCTCCCGGGGCCACCCTGAAGACAGAAGAGCTCTCTGTC TCCACCAGGACCACCTGGCTGGCCCTCACCTTGGCCCTGGTTTTCCTTCTGCTGATCAGC ATGGCTGCGAACGTGTCCTTGTTCCTTGGGTCAAGGGCAAAGCGGAGCCGGCATCTGGTC GGGGCCTACGCCTACCACCCGCTGCAGGAGACGAATGGGGAGCTCCTGGCCGTTGAGAAG GAGCAGCCAGGTGACACCTGTAATCCCTTCAAGGACTGAAGCCTCCGGCTACCCATCACA GCCTGTTTTGAGGGCTTGTTTCCACAAGCTCCGGCTTCTGCAGGGGAAGTGCCAGGCCCT GACCATCTGGGTGGTTTCCTGACAGCACCTGTGCCTCAGCACCTCACCCGGACGCCTGCC GTGGCACATGCCACCCCAGTAGTCCAGCGCTTCCTGGAGAGACTGCCTCCCTCCCCGCCT GCCTGTGTCTGCTGCTCGGAGGCCCATCCCCCAGGGCCTGCCCCACTGCCAAAGAGCCTC CAGCCTCCTGGGACGGGGCTGCCAGTGAATGGAACTTGTCATGACTGAGCCATGGCCAAG TGCAGGGTCCAGCCAGCCCCCTCGGACCCGGTGGATTGAAGGGGCAACGGCCACATCACA GGACCCTTTTTTTTACAGACCTCATCACTGAATTTGCCAACTAGAATTCTGTTTCCTGTC AAGGGAAGATCCTTAGAAGGGAAGAGGGGTGAAATCATGTTTACAGGCTCTACTGCCAAG AGGGTTTTTCTACCACTTGAATAAATTGATACAATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGACCTGTGTGGAGGGGCACTGCCAGTGCGTGGGGAGCTTCTGGCGGGGCGCTGCCTGC GACGAGCTGGACTGTGGCCCCGCCAACTGCAGCCAGCACGGGCTCTGCACGGAGACCGGC TGCCGCTGCGAAGCTGGATGGACAGGGTCCAACTGCAGTGAAGCTTGCACCAACGGCTTC TTTGGGGAGGACTGTGCCAAGAAGTGCCAGTGTCATAATGGAGCCACCTGTGACCCCATA CAGGGGACCTGTGCCTGTCCCCCTGGCTTCACTGGAGACACGTGTGTGCAGGAGTGTCCC CTCGGCTGGTACGGGCCAGGCTGCCAGAGCCCTTGCAAGTGTGAGCACCAGTGTCCCTGT GACCCGCAGACAGGCAACTGCAGCCTCACCTGGTCACCCACACTGAACAGCCTCCTCTCC CAAGTGAAGCAGTGTCTCCCGCCTCCCGGGGCCACCCTGAAGACAGAAGAGCTCTCTGTC TCCACCAGGACCACCTGGCTGGCCCTCACCTTGGCCCTGGTTTTCCTTCTGCTGATCAGC ATGGCTGCGAACGTGTCCTTGTTCCTTGGGTCAAGGGCAAAGCGGAGCCGGCATCTGGTC GGGGCCTACGCCTACCACCCGCTGCAGGAGACGAATGGGGAGCTCCTGGCCGTTGAGAAG GAGCAGCCAGGTGACACCTGTAATCCCTTCAAGGACTGAAGCCTCCGGCTACCCATCACA GCCTGTTTTGAGGGCTTGTTTCCACAAGCTCCGGCTTCTGCAGGGGAAGTGCCAGGCCCT GACCATCTGGGTGGTTTCCTGACAGCACCTGTGCCTCAGCACCTCACCCGGACGCCTGCC GTGGCACATGCCACCCCAGTAGTCCAGCGCTTCCTGGAGAGACTGCCTCCCTCCCCGCCT GCCTGTGTCTGCTGCTCGGAGGCCCATCCCCCAGGGCCTGCCCCACTGCCAAAGAGCCTC CAGCCTCCTGGGACGGGGCTGCCAGTGAATGGAACTTGTCATGACTGAGCCATGGCCAAG TGCAGGGTCCAGCCAGCCCCCTCGGACCCGGTGGATTGAAGGGGCAACGGCCACATCACA GGACCCTTTTTTTTACAGACCTCATCACTGAATTTGCCAACTAGAATTCTGTTTCCTGTC AAGGGAAGATCCTTAGAAGGGAAGAGGGGTGAAATCATGTTTACAGGCTCTACTGCCAAG AGGGTTTTTCTACCACTTGAATAAATTGATACAATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 7-115, + strand, RNAz p=0.800719 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 7-115, + strand, RNAz p=0.800719 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-115, gnl|bosTau2|chr25 (4885828-4885714) | |
| 1-115, gnl|canFam2|chr6 (39462999-39462861) | |
| 1-115, gnl|danRer3|chr16 (39777872-39778004) | |
| 1-115, gnl|echTel1|scaffold_165846 (1615-1557) | |
| 1-115, gnl|fr1|chrUn (138086646-138086511) | |
| 1-115, gnl|galGal2|chr14 (1741705-1741567) | |
| 1-115, gnl|hg17|chr16 (5017977-5018115) | |
| 1-115, gnl|Hg17|chr16 (5018096-5017982) | |
| 1-115, gnl|loxAfr1|scaffold_56150 (144-6) | |
| 1-115, gnl|mm7|chr16 (4871968-4872106) | |
| 1-115, gnl|Mm7|chr16 (4872087-4871973) | |
| 1-115, gnl|monDom2|scaffold_17 (42303019-42302881) | |
| 1-115, gnl|panTro1|chr18 (4970517-4970655) | |
| 1-115, gnl|rheMac2|chr20 (5203939-5204077) | |
| 1-115, gnl|rn3|chr10 (10500155-10500017) | |
| 1-115, gnl|tetNig1|chrUn_random (41219338-41219473) | |
| 1-115, gnl|xenTro1|scaffold_1149 (262466-262601) | |
| 162-292, gnl|bosTau2|chr25 (4884487-4884357) | |
| 162-292, gnl|Hg17|chr1 (153695110-153695240) | |
| 162-292, gnl|Mm7|chr4 (153256730-153256860) | |
| 473-1235, gnl|bosTau2|chr25 (4882523-4881729) | |
| 473-1235, gnl|canFam2|chr6 (39467381-39466705) | |
| 473-1235, gnl|dasNov1|scaffold_129989 (6193-5608) | |
| 473-1235, gnl|hg17|chr16 (5014865-5015538) | |
| 473-1235, gnl|Hg17|chr16 (5015703-5014880) | |
| 473-1235, gnl|mm7|chr16 (4868520-4869148) | |
| 473-1235, gnl|Mm7|chr16 (4869317-4868535) | |
| 473-1235, gnl|monDom2|scaffold_17 (42306802-42305978) | |
| 473-1235, gnl|panTro1|chr18 (4967179-4967852) | |
| 473-1235, gnl|rheMac2|chr20 (5200856-5201525) | |
| 473-1235, gnl|rn3|chr10 (10503592-10502961) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-115, gnl|bosTau2|chr25 (4885828-4885714) | |
| 1-115, gnl|canFam2|chr6 (39462999-39462861) | |
| 1-115, gnl|danRer3|chr16 (39777872-39778004) | |
| 1-115, gnl|echTel1|scaffold_165846 (1615-1557) | |
| 1-115, gnl|fr1|chrUn (138086646-138086511) | |
| 1-115, gnl|galGal2|chr14 (1741705-1741567) | |
| 1-115, gnl|hg17|chr16 (5017977-5018115) | |
| 1-115, gnl|Hg17|chr16 (5018096-5017982) | |
| 1-115, gnl|loxAfr1|scaffold_56150 (144-6) | |
| 1-115, gnl|mm7|chr16 (4871968-4872106) | |
| 1-115, gnl|Mm7|chr16 (4872087-4871973) | |
| 1-115, gnl|monDom2|scaffold_17 (42303019-42302881) | |
| 1-115, gnl|panTro1|chr18 (4970517-4970655) | |
| 1-115, gnl|rheMac2|chr20 (5203939-5204077) | |
| 1-115, gnl|rn3|chr10 (10500155-10500017) | |
| 1-115, gnl|tetNig1|chrUn_random (41219338-41219473) | |
| 1-115, gnl|xenTro1|scaffold_1149 (262466-262601) | |
| 162-292, gnl|bosTau2|chr25 (4884487-4884357) | |
| 162-292, gnl|Hg17|chr1 (153695110-153695240) | |
| 162-292, gnl|Mm7|chr4 (153256730-153256860) | |
| 473-1235, gnl|bosTau2|chr25 (4882523-4881729) | |
| 473-1235, gnl|canFam2|chr6 (39467381-39466705) | |
| 473-1235, gnl|dasNov1|scaffold_129989 (6193-5608) | |
| 473-1235, gnl|hg17|chr16 (5014865-5015538) | |
| 473-1235, gnl|Hg17|chr16 (5015703-5014880) | |
| 473-1235, gnl|mm7|chr16 (4868520-4869148) | |
| 473-1235, gnl|Mm7|chr16 (4869317-4868535) | |
| 473-1235, gnl|monDom2|scaffold_17 (42306802-42305978) | |
| 473-1235, gnl|panTro1|chr18 (4967179-4967852) | |
| 473-1235, gnl|rheMac2|chr20 (5200856-5201525) | |
| 473-1235, gnl|rn3|chr10 (10503592-10502961) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cga (0.279096) | |
| nlu (0.191681) | |
| cli (0.152812) | |
| eep (0.122564) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| nlu (0.191681) | |
| cli (0.152812) | |
| eep (0.122564) |