Non-Coding RNA Search

Ss1.1-Pig4-TMW8016P16.5

Sequence:


               
               GAGGGCGCCATGGCGCTGCTCTGGTTGCAGCGCTTCGAGCTTCTGCTCTTTGCTGCTACT
TTCCTGTGCGGAGCCGTGGCGGCCGTGGCGCTGACCCGGACCCAGGGCTCCTTCAGGGGC
AGCTGTCCCCTGTATGGTGTGGCCACCCTGAATGACTCCTCCTTGGCCCTGTCCCGACCC
TCGGCCCCATCCCTCTGCTACTTTGTGGCTGGGGCTTCTGGCCTACTGGCCCTCTACTGT
CTCCTGCTTCTGCTCTTCTGGGTCTACTGCAGCTGCATCGAGAACTCCCAAAGAGGCCGT
ACGGGGCTCTGCATTGTATTGGCCATCTCAGCTGTAGCCATCTTCCTGGTTTTAGTGTCT
GCCTGTATCCTCCGATTTGGCACCAGTTCCCTCTGCAAATCCATCGTCTCCCTGAACATA
ACTAGCTGCTCTGATGCTCAGAGAACTCCATGGATACCCCCTGGAACCGCTCTGCAGTTT
TACTCCAACCTACACAATGCTGAAACCTCCTCTTGGGTGAATCTGGTATTGTGGTGTATG
ATCTTGGTGCTCCAAGTCGTGCAGCGGAAGTCTGAAGCCACCCCAAACTGGCCTCTGGAG
AGAGGTGACCCTGAGTGGAGGTCTGAGACAGACGTTCTTGTTGGGCCCCGCCTTTCCCAT
TCCTGAAGACTACCCAAAGTATTTCCTGCAGCCAAAGACTCCATGCCCAAGTGCCTGCAA
AAATCCTCTTGCCCCCACATGGCCCTGTTTATGCCAGGAGCCTTAGTTTTCCCTCTAGGA
GGGAAGCAGGATGAGAGGCACTCTCTTCCTCTAGCTGTTTTTGTACCAAAATATTATATT
ATTTTCTTCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGCGCCATGGCGCTGCTCTGGTTGCAGCGCTTCGAGCTTCTGCTCTTTGCTGCTACT
TTCCTGTGCGGAGCCGTGGCGGCCGTGGCGCTGACCCGGACCCAGGGCTCCTTCAGGGGC
AGCTGTCCCCTGTATGGTGTGGCCACCCTGAATGACTCCTCCTTGGCCCTGTCCCGACCC
TCGGCCCCATCCCTCTGCTACTTTGTGGCTGGGGCTTCTGGCCTACTGGCCCTCTACTGT
CTCCTGCTTCTGCTCTTCTGGGTCTACTGCAGCTGCATCGAGAACTCCCAAAGAGGCCGT
ACGGGGCTCTGCATTGTATTGGCCATCTCAGCTGTAGCCATCTTCCTGGTTTTAGTGTCT
GCCTGTATCCTCCGATTTGGCACCAGTTCCCTCTGCAAATCCATCGTCTCCCTGAACATA
ACTAGCTGCTCTGATGCTCAGAGAACTCCATGGATACCCCCTGGAACCGCTCTGCAGTTT
TACTCCAACCTACACAATGCTGAAACCTCCTCTTGGGTGAATCTGGTATTGTGGTGTATG
ATCTTGGTGCTCCAAGTCGTGCAGCGGAAGTCTGAAGCCACCCCAAACTGGCCTCTGGAG
AGAGGTGACCCTGAGTGGAGGTCTGAGACAGACGTTCTTGTTGGGCCCCGCCTTTCCCAT
TCCTGAAGACTACCCAAAGTATTTCCTGCAGCCAAAGACTCCATGCCCAAGTGCCTGCAA
AAATCCTCTTGCCCCCACATGGCCCTGTTTATGCCAGGAGCCTTAGTTTTCCCTCTAGGA
GGGAAGCAGGATGAGAGGCACTCTCTTCCTCTAGCTGTTTTTGTACCAAAATATTATATT
ATTTTCTTCCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61810039|ref|XP_589582.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61810039|ref|XP_589582.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               103-293, gnl|bosTau2|chr29 (32667655-32667465)
               

               
               103-293, gnl|Hg17|chr11 (62313068-62313258)
               

               
               103-293, gnl|Mm7|chr19 (8453857-8453667)
               


               
               505-848, gnl|bosTau2|chr29 (32666757-32666422)
               

               
               505-848, gnl|Hg17|chr11 (62313934-62314287)
               

               
               505-848, gnl|Mm7|chr19 (8452996-8452693)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-293, gnl|bosTau2|chr29 (32667655-32667465)
               

               
               103-293, gnl|Hg17|chr11 (62313068-62313258)
               

               
               103-293, gnl|Mm7|chr19 (8453857-8453667)
               


               
               505-848, gnl|bosTau2|chr29 (32666757-32666422)
               

               
               505-848, gnl|Hg17|chr11 (62313934-62314287)
               

               
               505-848, gnl|Mm7|chr19 (8452996-8452693)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               csp (0.322373)
               

               
               nje (0.16592)
               

               
               fat (0.147427)
               

               
               ste (0.135208)
               

               
               cbr (0.127975)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.322373)
               

               
               nje (0.16592)
               

               
               fat (0.147427)
               

               
               ste (0.135208)
               

               
               cbr (0.127975)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	103-293, gnl\|bosTau2\|chr29 (32667655-32667465)
	103-293, gnl\|Hg17\|chr11 (62313068-62313258)
	103-293, gnl\|Mm7\|chr19 (8453857-8453667)

	505-848, gnl\|bosTau2\|chr29 (32666757-32666422)
	505-848, gnl\|Hg17\|chr11 (62313934-62314287)
	505-848, gnl\|Mm7\|chr19 (8452996-8452693)

	csp (0.322373)
	nje (0.16592)
	fat (0.147427)
	ste (0.135208)
	cbr (0.127975)
	cly (0.120642)
	pgl (0.118483)
	eje (0.0988338)