Non-Coding RNA Search

Ss1.1-Pig4-TMW8016P23.3

Sequence:


               
               TTTGCAAGCTCAGTTATTGCCAGCAGTTGGGAGATGGCTGAAGTTAGGTTTTTCTAGTAT
GTGACATAGTGTGCCTCACAGACAGGTTTCTTTTGTTTCTGAATTTTTAGCTAGATGCAG
TGAAATAGCAGGGTTTGGGTTGGTTTCTTTGACAACACACAGCAAATTACTTGAGTAGTC
TGAAATTAGCAAGACCTAGGGACAGAAGAAAGGCACAAAATGGGAAAATTCCAAAATACC
CAAGATTCAAGACCAGGAAAATAATGGTAAATGGTTGACATTTTAAAATATTCTTCATAT
GTAATATACTTACGTGATTATCTCTAGGGGACTATATTTGGGATACTGACGTTATACTTT
CTTGCTTATCCAAAGATTAGCTACGTTTAAGATAAATGGTACTGTTGCCTCTGTGGCTGA
ATTTAATATTGTGAGATGGAACCTCCAGGGAATAGAAACAGACTACCCAAAGCATTGTTA
GTACTTAAAAAAATGTTCGAGAGCGATTATGGTCACCTCTTCATTTTTTAGGACTGTGTA
GTCTGATTAGTGAGTTTCGATGCCTTATTTATCCTCCAAAGTAGGGACCTCAGGAAATAG
GGAAGTCGGTTTAATTGCCAGAGAGGAAAATGGAATCACTAGGTGGAGCGAGTTTTTTAG
GATTATTTATTGATTCCAGGTTTCTGGGCTTTTTCTAGAGCGTGTTAGTATGTGAGTATG
TTATGACCATATATAAGTGTTTTGGTTTTAAGCAAGTGTCTATAGTGATACTTGATGACA
GGGGACAAGTCCAAAATCAGTGCCCTTAGAGCTCCCCAGGCAGAACTCCTCCTTTATGCC
TTTAGTTTTATGATTTGGTAAAGAGAAGGAGTCAGTAGGAAAAGACTGATGCTCAACAGC
AGTAGAGGTAAGTTCTTCCATTGTAGAACCTTGACGTATTTCAGGTGAATTCATTCCGTG
CGGTAGGAGTTCCTAGGTGTTTTTCCCAGCACTTGGGGTTCCTGCCGTGATGGGGTGGTG
CGTCCTAACTTGTCCTGAGTGTGGCTGTGTCCCCATCAAAGCCCTATCGGGGAGGACCCC
AGTGGCTCCTGCGCCACCACTTTGCTCCGTCAGCCTTCCTTCCTTTTTCCCCGCTTGTTC
TGTCAAATGCTGTACCTCCCCTCTCTGTTTTTCCATCTTGTTAACAGCTTGTGGAGAATA
AAGCAGGAGTTCTTTTTATATCCGAGTCCTTAATGATCAGGAAACGAATCATAAACAAAC
AAAAACAGTTGTAAACAGCAATTAGAGTGTGACTAGAAAGGCAGCAATGTGCCTGTTCCC
TACATACGGTCTGTTTCCCTCAGATTTTTATAGATTTCCACCAAGAGCTGGAAATGTGAT
ATTTTCCATTCATAACTGTTGGGTAACTCAGTACTTTCACTACACTGGCCCATTGACAAC
CTTCAACCTTTATACGTTTCGTTTAGTTTGCTTCTTATTATTAAGTGGATGGTAGTTTAC
CAATTTCTGAAATATCCGAGTCTTTGAGTTCAATGCTGGTGACTTCTGGGGTGGTGTTTA
GATGAACTCTGACTCTTCATTTTACTTCAAGCAGGTGCTATATTCCAGCCGTAAACATTA
AGGGGGAAAATGCGGTGTTGCTCTGCTTTCGAGGCTAGTAGGGAATGTGTGGTGTTTTAG
ATAGGCATAGATTCTTCATCTACCTAAGATTTTAATTTCTTTACGTTCAGGCAAGAGAGT
GGATCAGTACTGTCTGCTAATAAATGAAAAAAGGAAATCAACTCTGAAAACAATGTTTAT
ACTCTTACTTTAGAAGTTACTTTTATTTCTGAAGCTGAATTATTGATTAAACTCAATTTG
TAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGCAAGCTCAGTTATTGCCAGCAGTTGGGAGATGGCTGAAGTTAGGTTTTTCTAGTAT
GTGACATAGTGTGCCTCACAGACAGGTTTCTTTTGTTTCTGAATTTTTAGCTAGATGCAG
TGAAATAGCAGGGTTTGGGTTGGTTTCTTTGACAACACACAGCAAATTACTTGAGTAGTC
TGAAATTAGCAAGACCTAGGGACAGAAGAAAGGCACAAAATGGGAAAATTCCAAAATACC
CAAGATTCAAGACCAGGAAAATAATGGTAAATGGTTGACATTTTAAAATATTCTTCATAT
GTAATATACTTACGTGATTATCTCTAGGGGACTATATTTGGGATACTGACGTTATACTTT
CTTGCTTATCCAAAGATTAGCTACGTTTAAGATAAATGGTACTGTTGCCTCTGTGGCTGA
ATTTAATATTGTGAGATGGAACCTCCAGGGAATAGAAACAGACTACCCAAAGCATTGTTA
GTACTTAAAAAAATGTTCGAGAGCGATTATGGTCACCTCTTCATTTTTTAGGACTGTGTA
GTCTGATTAGTGAGTTTCGATGCCTTATTTATCCTCCAAAGTAGGGACCTCAGGAAATAG
GGAAGTCGGTTTAATTGCCAGAGAGGAAAATGGAATCACTAGGTGGAGCGAGTTTTTTAG
GATTATTTATTGATTCCAGGTTTCTGGGCTTTTTCTAGAGCGTGTTAGTATGTGAGTATG
TTATGACCATATATAAGTGTTTTGGTTTTAAGCAAGTGTCTATAGTGATACTTGATGACA
GGGGACAAGTCCAAAATCAGTGCCCTTAGAGCTCCCCAGGCAGAACTCCTCCTTTATGCC
TTTAGTTTTATGATTTGGTAAAGAGAAGGAGTCAGTAGGAAAAGACTGATGCTCAACAGC
AGTAGAGGTAAGTTCTTCCATTGTAGAACCTTGACGTATTTCAGGTGAATTCATTCCGTG
CGGTAGGAGTTCCTAGGTGTTTTTCCCAGCACTTGGGGTTCCTGCCGTGATGGGGTGGTG
CGTCCTAACTTGTCCTGAGTGTGGCTGTGTCCCCATCAAAGCCCTATCGGGGAGGACCCC
AGTGGCTCCTGCGCCACCACTTTGCTCCGTCAGCCTTCCTTCCTTTTTCCCCGCTTGTTC
TGTCAAATGCTGTACCTCCCCTCTCTGTTTTTCCATCTTGTTAACAGCTTGTGGAGAATA
AAGCAGGAGTTCTTTTTATATCCGAGTCCTTAATGATCAGGAAACGAATCATAAACAAAC
AAAAACAGTTGTAAACAGCAATTAGAGTGTGACTAGAAAGGCAGCAATGTGCCTGTTCCC
TACATACGGTCTGTTTCCCTCAGATTTTTATAGATTTCCACCAAGAGCTGGAAATGTGAT
ATTTTCCATTCATAACTGTTGGGTAACTCAGTACTTTCACTACACTGGCCCATTGACAAC
CTTCAACCTTTATACGTTTCGTTTAGTTTGCTTCTTATTATTAAGTGGATGGTAGTTTAC
CAATTTCTGAAATATCCGAGTCTTTGAGTTCAATGCTGGTGACTTCTGGGGTGGTGTTTA
GATGAACTCTGACTCTTCATTTTACTTCAAGCAGGTGCTATATTCCAGCCGTAAACATTA
AGGGGGAAAATGCGGTGTTGCTCTGCTTTCGAGGCTAGTAGGGAATGTGTGGTGTTTTAG
ATAGGCATAGATTCTTCATCTACCTAAGATTTTAATTTCTTTACGTTCAGGCAAGAGAGT
GGATCAGTACTGTCTGCTAATAAATGAAAAAAGGAAATCAACTCTGAAAACAATGTTTAT
ACTCTTACTTTAGAAGTTACTTTTATTTCTGAAGCTGAATTATTGATTAAACTCAATTTG
TAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-1870, gnl|bosTau2|chr28 (4933324-4935170)
               

               
               1-1870, gnl|Hg17|chr1 (233252085-233253971)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1870, gnl|bosTau2|chr28 (4933324-4935170)
               

               
               1-1870, gnl|Hg17|chr1 (233252085-233253971)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               isp (8.57143)
               

               
               vin (7.98138)
               

               
               ssp (3.38799)
               

               
               ldo (2.61907)
               

               
               hea (2.24949)
               

               
               sme (2.13806)
               

               
               tbr (1.85014)
               

               
               ste (1.35208)
               

               
               hlv (1.25331)
               

               
               mas (1.05152)
               

               
               bfe (0.899146)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (8.57143)
               

               
               vin (7.98138)
               

               
               ssp (3.38799)
               

               
               ldo (2.61907)
               

               
               hea (2.24949)
               

               
               sme (2.13806)
               

               
               tbr (1.85014)
               

               
               ste (1.35208)
               

               
               hlv (1.25331)
               

               
               mas (1.05152)
               

               
               bfe (0.899146)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)

	1-1870, gnl\|bosTau2\|chr28 (4933324-4935170)
	1-1870, gnl\|Hg17\|chr1 (233252085-233253971)

	isp (8.57143)
	vin (7.98138)
	ssp (3.38799)
	ldo (2.61907)
	hea (2.24949)
	sme (2.13806)
	tbr (1.85014)
	ste (1.35208)
	hlv (1.25331)
	mas (1.05152)
	bfe (0.899146)
	ese (0.253004)
	eru (0.240096)
	nms (0.213858)
	nep (0.183925)
	eye (0.170503)
	che (0.136314)
	lyg (0.133103)
	tra (0.123092)