Ss1.1-Pig4-TMW8017A02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCTTTTCCATGTGTGTGGATAACCGCAGCGTCTTACCAGATCACTTCTCTCCAGAGAAT GTAAATGACACAGCCAAAGAAACATGCTTAAATTGGTTTTTCAAGATTGCTTCCATCAGG GAACTGATTCCGAGATTTTACGTGGAAGCATCCATCCTGAAGTGTAACAAGTTCCTCTCC AAAACGGGGATCTCAGAGTGTCTGCCGAGGCTGACCTGCATGATCCGGGGGATCGGGGAC CCGCTGGTGTCGGTGTACGCCAGGGCCTACCTGTGCAGGGTGGGCATGGAGGTGGCACCA CATCTCAAAGAAAGCCTAAATAAGAACTTTTTTGACTTCCTCCTCACATTCAAACAGATT CACGGGGACACGGTCCAGAACCAGCTGGTGGTCCAGGGAGTGGAGCTGCCATCCTACCTG CCCCTGTACTCGCCTGCCATGGATTGGATCTTCCAGTGTATCTCCTACCACGCCCCCGAG GCTCTGTTAACCGAGATGATGGAGAGATGTAAGAAACTAGGAAACAATGCCTTGCTCTTG AATTCTGTGATGTCAGCCTTCCGGGCCGAGTTCATCGCCACACGGTCCATGGATTTCATC GGCATGATTAAAGAGTGCCATGAGTCTGGCTTCCCCAAGCATCTCCTTTTTCGCTCACTG GGGTTAAACTTGGCCTTGGCTGATCCCCCCGAGGGTGACCGACTTCAGATCCTCAATGAA GCTTGGAAAGTTATCACTAAGTTGAAGAATCCACAGGATTACATTAATTGTGCCGAAGTA TGGGTAGAATACACCTGCAAGCATTTCACGAAACGAGAGGTGAACACTGTCCTGGCTGAT GTCATCAAGCACATGACTCCAGATCGTGCATTCGAAGACTCCTACCCTCAGCTTCAGTCA ATAATTAAGAAAGTGATAGCACACTTCCATGATTTCTCAGTTCTTTTCTCAGTGGAGAAA TTTCTGCCATTTCTGGACATGTTCCAAAAAGAGGGTGTGCGCGTGGAGGTTTGCAGATGC ATCATGGAAGTTTTTATCAAGCATCAGCAAGAGCCCACCAAGGACCCAGTCATTCTGAAC GCCCTTTTGCATGTTTGCAAGACCATGCATGACTCTGTGAATGCACTCACTCTTGAGGAC GAGAAAAGAATGCTGGCCTATTTGATTAATGGATTTATAAAAATGGTGTCCTTTGGCCGT GATTTTGAACAACAGCTGAGCTTTTACGTGGAGGCCAGGTCAATGTTCTGCAATCTGGAA CCTGTTCTTGTGCAGCTGATCCACAGTGTGAACCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCTTTTCCATGTGTGTGGATAACCGCAGCGTCTTACCAGATCACTTCTCTCCAGAGAAT GTAAATGACACAGCCAAAGAAACATGCTTAAATTGGTTTTTCAAGATTGCTTCCATCAGG GAACTGATTCCGAGATTTTACGTGGAAGCATCCATCCTGAAGTGTAACAAGTTCCTCTCC AAAACGGGGATCTCAGAGTGTCTGCCGAGGCTGACCTGCATGATCCGGGGGATCGGGGAC CCGCTGGTGTCGGTGTACGCCAGGGCCTACCTGTGCAGGGTGGGCATGGAGGTGGCACCA CATCTCAAAGAAAGCCTAAATAAGAACTTTTTTGACTTCCTCCTCACATTCAAACAGATT CACGGGGACACGGTCCAGAACCAGCTGGTGGTCCAGGGAGTGGAGCTGCCATCCTACCTG CCCCTGTACTCGCCTGCCATGGATTGGATCTTCCAGTGTATCTCCTACCACGCCCCCGAG GCTCTGTTAACCGAGATGATGGAGAGATGTAAGAAACTAGGAAACAATGCCTTGCTCTTG AATTCTGTGATGTCAGCCTTCCGGGCCGAGTTCATCGCCACACGGTCCATGGATTTCATC GGCATGATTAAAGAGTGCCATGAGTCTGGCTTCCCCAAGCATCTCCTTTTTCGCTCACTG GGGTTAAACTTGGCCTTGGCTGATCCCCCCGAGGGTGACCGACTTCAGATCCTCAATGAA GCTTGGAAAGTTATCACTAAGTTGAAGAATCCACAGGATTACATTAATTGTGCCGAAGTA TGGGTAGAATACACCTGCAAGCATTTCACGAAACGAGAGGTGAACACTGTCCTGGCTGAT GTCATCAAGCACATGACTCCAGATCGTGCATTCGAAGACTCCTACCCTCAGCTTCAGTCA ATAATTAAGAAAGTGATAGCACACTTCCATGATTTCTCAGTTCTTTTCTCAGTGGAGAAA TTTCTGCCATTTCTGGACATGTTCCAAAAAGAGGGTGTGCGCGTGGAGGTTTGCAGATGC ATCATGGAAGTTTTTATCAAGCATCAGCAAGAGCCCACCAAGGACCCAGTCATTCTGAAC GCCCTTTTGCATGTTTGCAAGACCATGCATGACTCTGTGAATGCACTCACTCTTGAGGAC GAGAAAAGAATGCTGGCCTATTTGATTAATGGATTTATAAAAATGGTGTCCTTTGGCCGT GATTTTGAACAACAGCTGAGCTTTTACGTGGAGGCCAGGTCAATGTTCTGCAATCTGGAA CCTGTTCTTGTGCAGCTGATCCACAGTGTGAACCGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 77 entry(ies) | More info |
| Aligned organism(s): 77 entry(ies) | Help | Less info |
| 31-140, gnl|bosTau2|chr25 (16886846-16886954) | |
| 31-140, gnl|canFam2|chr6 (28697031-28696905) | |
| 31-140, gnl|danRer3|chr14 (62394531-62394650) | |
| 31-140, gnl|dasNov1|scaffold_137473 (3493-3619) | |
| 31-140, gnl|echTel1|scaffold_224409 (4138-4251) | |
| 31-140, gnl|fr1|chrUn (30162457-30162590) | |
| 31-140, gnl|galGal2|chrUn (39307339-39307218) | |
| 31-140, gnl|hg17|chr16 (19526981-19527108) | |
| 31-140, gnl|Hg17|chr16 (19526992-19527100) | |
| 31-140, gnl|loxAfr1|scaffold_452 (94649-94523) | |
| 31-140, gnl|mm7|chr7 (114695580-114695701) | |
| 31-140, gnl|Mm7|chr7 (114695585-114695693) | |
| 31-140, gnl|monDom2|scaffold_19 (39747569-39747696) | |
| 31-140, gnl|oryCun1|scaffold_174703 (63428-63302) | |
| 31-140, gnl|panTro1|chr18 (19990896-19991023) | |
| 31-140, gnl|rheMac2|chr20 (18583635-18583761) | |
| 31-140, gnl|rn3|chr1 (177137826-177137947) | |
| 31-140, gnl|tetNig1|chr2 (3053153-3053279) | |
| 31-140, gnl|xenTro1|scaffold_90 (437012-436883) | |
| 172-282, gnl|bosTau2|chr25 (16888894-16889004) | |
| 172-282, gnl|canFam2|chr6 (28694935-28694790) | |
| 172-282, gnl|danRer3|chr14 (62397804-62397931) | |
| 172-282, gnl|dasNov1|scaffold_16527 (1143-1268) | |
| 172-282, gnl|echTel1|scaffold_286184 (43223-43349) | |
| 172-282, gnl|fr1|chrUn (30162881-30162987) | |
| 172-282, gnl|galGal2|chrUn (39305947-39305838) | |
| 172-282, gnl|hg17|chr16 (19529117-19529263) | |
| 172-282, gnl|Hg17|chr16 (19529131-19529241) | |
| 172-282, gnl|loxAfr1|scaffold_452 (92544-92403) | |
| 172-282, gnl|mm7|chr7 (114697840-114697971) | |
| 172-282, gnl|Mm7|chr7 (114697851-114697960) | |
| 172-282, gnl|monDom2|scaffold_19 (39750917-39751072) | |
| 172-282, gnl|panTro1|chr18 (19993045-19993191) | |
| 172-282, gnl|rheMac2|chr20 (18586093-18586239) | |
| 172-282, gnl|rn3|chr1 (177139986-177140117) | |
| 172-282, gnl|tetNig1|chr2 (3053519-3053633) | |
| 172-282, gnl|xenTro1|scaffold_90 (435410-435292) | |
| 356-481, gnl|bosTau2|chr25 (16894232-16894357) | |
| 356-481, gnl|canFam2|chr6 (28690683-28690586) | |
| 356-481, gnl|danRer3|chr14 (62399097-62399192) | |
| 356-481, gnl|dasNov1|scaffold_294486 (476-573) | |
| 356-481, gnl|fr1|chrUn (30163209-30163309) | |
| 356-481, gnl|galGal2|chrUn (39304475-39304389) | |
| 356-481, gnl|hg17|chr16 (19535491-19535588) | |
| 356-481, gnl|Hg17|chr16 (19535507-19535632) | |
| 356-481, gnl|loxAfr1|scaffold_452 (87303-87206) | |
| 356-481, gnl|mm7|chr7 (114702734-114702829) | |
| 356-481, gnl|Mm7|chr7 (114702748-114702873) | |
| 356-481, gnl|monDom2|scaffold_19 (39755461-39755547) | |
| 356-481, gnl|oryCun1|scaffold_174703 (57623-57528) | |
| 356-481, gnl|panTro1|chr18 (19998500-19998597) | |
| 356-481, gnl|rheMac2|chr20 (18592527-18592624) | |
| 356-481, gnl|rn3|chr1 (177145051-177145146) | |
| 356-481, gnl|tetNig1|chr2 (3053879-3053967) | |
| 356-481, gnl|xenTro1|scaffold_90 (434403-434317) | |
| 638-757, gnl|bosTau2|chr25 (16908774-16908893) | |
| 638-757, gnl|canFam2|chr6 (28679181-28679051) | |
| 638-757, gnl|danRer3|chr14 (62400800-62400930) | |
| 638-757, gnl|dasNov1|scaffold_10157 (47590-47721) | |
| 638-757, gnl|echTel1|scaffold_305895 (3523-3654) | |
| 638-757, gnl|fr1|chrUn (30163819-30163942) | |
| 638-757, gnl|galGal2|chrUn (39299625-39299495) | |
| 638-757, gnl|hg17|chr16 (19547454-19547585) | |
| 638-757, gnl|Hg17|chr16 (19547458-19547577) | |
| 638-757, gnl|loxAfr1|scaffold_36995 (25149-25018) | |
| 638-757, gnl|mm7|chr7 (114715129-114715260) | |
| 638-757, gnl|Mm7|chr7 (114715133-114715252) | |
| 638-757, gnl|monDom2|scaffold_19 (39764325-39764456) | |
| 638-757, gnl|oryCun1|scaffold_173268 (40427-40558) | |
| 638-757, gnl|panTro1|chr18 (20010503-20010634) | |
| 638-757, gnl|rheMac2|chr20 (18604814-18604945) | |
| 638-757, gnl|rn3|chr1 (177153710-177153840) | |
| 638-757, gnl|tetNig1|chr2 (3054424-3054552) | |
| 638-757, gnl|xenTro1|scaffold_90 (429482-429357) | |
| 941-1041, gnl|bosTau2|chr25 (16927441-16927541) | |
| 941-1041, gnl|Hg17|chr16 (19558823-19558924) | |
| 941-1041, gnl|Mm7|chr7 (114723819-114723920) |
| Aligned organism(s): 77 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 31-140, gnl|bosTau2|chr25 (16886846-16886954) | |
| 31-140, gnl|canFam2|chr6 (28697031-28696905) | |
| 31-140, gnl|danRer3|chr14 (62394531-62394650) | |
| 31-140, gnl|dasNov1|scaffold_137473 (3493-3619) | |
| 31-140, gnl|echTel1|scaffold_224409 (4138-4251) | |
| 31-140, gnl|fr1|chrUn (30162457-30162590) | |
| 31-140, gnl|galGal2|chrUn (39307339-39307218) | |
| 31-140, gnl|hg17|chr16 (19526981-19527108) | |
| 31-140, gnl|Hg17|chr16 (19526992-19527100) | |
| 31-140, gnl|loxAfr1|scaffold_452 (94649-94523) | |
| 31-140, gnl|mm7|chr7 (114695580-114695701) | |
| 31-140, gnl|Mm7|chr7 (114695585-114695693) | |
| 31-140, gnl|monDom2|scaffold_19 (39747569-39747696) | |
| 31-140, gnl|oryCun1|scaffold_174703 (63428-63302) | |
| 31-140, gnl|panTro1|chr18 (19990896-19991023) | |
| 31-140, gnl|rheMac2|chr20 (18583635-18583761) | |
| 31-140, gnl|rn3|chr1 (177137826-177137947) | |
| 31-140, gnl|tetNig1|chr2 (3053153-3053279) | |
| 31-140, gnl|xenTro1|scaffold_90 (437012-436883) | |
| 172-282, gnl|bosTau2|chr25 (16888894-16889004) | |
| 172-282, gnl|canFam2|chr6 (28694935-28694790) | |
| 172-282, gnl|danRer3|chr14 (62397804-62397931) | |
| 172-282, gnl|dasNov1|scaffold_16527 (1143-1268) | |
| 172-282, gnl|echTel1|scaffold_286184 (43223-43349) | |
| 172-282, gnl|fr1|chrUn (30162881-30162987) | |
| 172-282, gnl|galGal2|chrUn (39305947-39305838) | |
| 172-282, gnl|hg17|chr16 (19529117-19529263) | |
| 172-282, gnl|Hg17|chr16 (19529131-19529241) | |
| 172-282, gnl|loxAfr1|scaffold_452 (92544-92403) | |
| 172-282, gnl|mm7|chr7 (114697840-114697971) | |
| 172-282, gnl|Mm7|chr7 (114697851-114697960) | |
| 172-282, gnl|monDom2|scaffold_19 (39750917-39751072) | |
| 172-282, gnl|panTro1|chr18 (19993045-19993191) | |
| 172-282, gnl|rheMac2|chr20 (18586093-18586239) | |
| 172-282, gnl|rn3|chr1 (177139986-177140117) | |
| 172-282, gnl|tetNig1|chr2 (3053519-3053633) | |
| 172-282, gnl|xenTro1|scaffold_90 (435410-435292) | |
| 356-481, gnl|bosTau2|chr25 (16894232-16894357) | |
| 356-481, gnl|canFam2|chr6 (28690683-28690586) | |
| 356-481, gnl|danRer3|chr14 (62399097-62399192) | |
| 356-481, gnl|dasNov1|scaffold_294486 (476-573) | |
| 356-481, gnl|fr1|chrUn (30163209-30163309) | |
| 356-481, gnl|galGal2|chrUn (39304475-39304389) | |
| 356-481, gnl|hg17|chr16 (19535491-19535588) | |
| 356-481, gnl|Hg17|chr16 (19535507-19535632) | |
| 356-481, gnl|loxAfr1|scaffold_452 (87303-87206) | |
| 356-481, gnl|mm7|chr7 (114702734-114702829) | |
| 356-481, gnl|Mm7|chr7 (114702748-114702873) | |
| 356-481, gnl|monDom2|scaffold_19 (39755461-39755547) | |
| 356-481, gnl|oryCun1|scaffold_174703 (57623-57528) | |
| 356-481, gnl|panTro1|chr18 (19998500-19998597) | |
| 356-481, gnl|rheMac2|chr20 (18592527-18592624) | |
| 356-481, gnl|rn3|chr1 (177145051-177145146) | |
| 356-481, gnl|tetNig1|chr2 (3053879-3053967) | |
| 356-481, gnl|xenTro1|scaffold_90 (434403-434317) | |
| 638-757, gnl|bosTau2|chr25 (16908774-16908893) | |
| 638-757, gnl|canFam2|chr6 (28679181-28679051) | |
| 638-757, gnl|danRer3|chr14 (62400800-62400930) | |
| 638-757, gnl|dasNov1|scaffold_10157 (47590-47721) | |
| 638-757, gnl|echTel1|scaffold_305895 (3523-3654) | |
| 638-757, gnl|fr1|chrUn (30163819-30163942) | |
| 638-757, gnl|galGal2|chrUn (39299625-39299495) | |
| 638-757, gnl|hg17|chr16 (19547454-19547585) | |
| 638-757, gnl|Hg17|chr16 (19547458-19547577) | |
| 638-757, gnl|loxAfr1|scaffold_36995 (25149-25018) | |
| 638-757, gnl|mm7|chr7 (114715129-114715260) | |
| 638-757, gnl|Mm7|chr7 (114715133-114715252) | |
| 638-757, gnl|monDom2|scaffold_19 (39764325-39764456) | |
| 638-757, gnl|oryCun1|scaffold_173268 (40427-40558) | |
| 638-757, gnl|panTro1|chr18 (20010503-20010634) | |
| 638-757, gnl|rheMac2|chr20 (18604814-18604945) | |
| 638-757, gnl|rn3|chr1 (177153710-177153840) | |
| 638-757, gnl|tetNig1|chr2 (3054424-3054552) | |
| 638-757, gnl|xenTro1|scaffold_90 (429482-429357) | |
| 941-1041, gnl|bosTau2|chr25 (16927441-16927541) | |
| 941-1041, gnl|Hg17|chr16 (19558823-19558924) | |
| 941-1041, gnl|Mm7|chr7 (114723819-114723920) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) | |
| cty (0.10408) |