Ss1.1-Pig4-TMW8017A11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCGAATCCTACCTTCCAAACAGGTTACACCCCTGGCACACCTTACAAAGTGTCCTGTT CCCCCACCAGCGGGGCAGTGCCGCCATACTCCTCCTCCCCAAACCCCTACCAGACCGCTG TGTACCCCGTGCGAAGTGCCTACCCCCAGCAGAGCCCATATGCACAGCAAGGCACGTACT ACACGCAGCCCCTGTATGCAGCACCCCCTCACGTCATCCACCACACCACGGTGGTGCAGC CCAATGGCATGCCGGCAACGGTGTACCCTGCTCCCATCCCTCCACCTAGAGGCAACGGGG TCACCATGGGCATGGTGGCGGGGACCACTATGGCCATGTCAGCAGGTACTCTGCTGACTG CCCACTCCCCAACTCCTGTGGCCCCCCACCCTGTCACCGTGCCCACATATCGGGCCCCAG GAACGCCCACGTACAGCTACGTGCCCCCTCAGTGGTGATCACCCTGCAAATGTTTGAGGA TGGAGCTGTGCAGTCACACCACGGAGGTTCCACAGCTGGTGCTGCAGGCCTCGGCCTCCA ACCAGGACTTTTCTTCTTAATGCTCTCGACACTTAGCTCAACACTACTACAGCTGGCCCA TGGGGCCCAGCGCCCTTAGTCTCCAACTGACTCTGTGGGTTGGTCTTAAAGCAAATCCAG TTTGGTGGGCTGCCAGGCAATTTTTTAGCTAACTGTAATGATAAAAAAGGGAGTATTAAT CTATTCTGAATCATATCTAGTTGAATGCATGTTAAAAAACAAACACAGAAACAAAGCTTG CTCAACCTACCTGCAGTGACTGATGCAGAACCATCATATGCAAAATCCAAAGGAATGGAG AGTATTTTACAACTTGTATCACCAATGCACTGTTGTAATGTATGCAGAGTCTTAAAGTTA TAAGTGTTAACAGTGAATTTCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCGAATCCTACCTTCCAAACAGGTTACACCCCTGGCACACCTTACAAAGTGTCCTGTT CCCCCACCAGCGGGGCAGTGCCGCCATACTCCTCCTCCCCAAACCCCTACCAGACCGCTG TGTACCCCGTGCGAAGTGCCTACCCCCAGCAGAGCCCATATGCACAGCAAGGCACGTACT ACACGCAGCCCCTGTATGCAGCACCCCCTCACGTCATCCACCACACCACGGTGGTGCAGC CCAATGGCATGCCGGCAACGGTGTACCCTGCTCCCATCCCTCCACCTAGAGGCAACGGGG TCACCATGGGCATGGTGGCGGGGACCACTATGGCCATGTCAGCAGGTACTCTGCTGACTG CCCACTCCCCAACTCCTGTGGCCCCCCACCCTGTCACCGTGCCCACATATCGGGCCCCAG GAACGCCCACGTACAGCTACGTGCCCCCTCAGTGGTGATCACCCTGCAAATGTTTGAGGA TGGAGCTGTGCAGTCACACCACGGAGGTTCCACAGCTGGTGCTGCAGGCCTCGGCCTCCA ACCAGGACTTTTCTTCTTAATGCTCTCGACACTTAGCTCAACACTACTACAGCTGGCCCA TGGGGCCCAGCGCCCTTAGTCTCCAACTGACTCTGTGGGTTGGTCTTAAAGCAAATCCAG TTTGGTGGGCTGCCAGGCAATTTTTTAGCTAACTGTAATGATAAAAAAGGGAGTATTAAT CTATTCTGAATCATATCTAGTTGAATGCATGTTAAAAAACAAACACAGAAACAAAGCTTG CTCAACCTACCTGCAGTGACTGATGCAGAACCATCATATGCAAAATCCAAAGGAATGGAG AGTATTTTACAACTTGTATCACCAATGCACTGTTGTAATGTATGCAGAGTCTTAAAGTTA TAAGTGTTAACAGTGAATTTCTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 511-627, - strand, RNAz p=0.556624 | |
| 773-888, - strand, RNAz p=0.730685 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 511-627, - strand, RNAz p=0.556624 | |
| 773-888, - strand, RNAz p=0.730685 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 153-348, gnl|bosTau2|chr15 (41754985-41754791) | |
| 153-348, gnl|canFam2|chr21 (27827454-27827219) | |
| 153-348, gnl|danRer3|chr18 (1056948-1056741) | |
| 153-348, gnl|dasNov1|scaffold_17147 (51596-51830) | |
| 153-348, gnl|echTel1|scaffold_292096 (8271-8075) | |
| 153-348, gnl|fr1|chrUn (220453461-220453672) | |
| 153-348, gnl|galGal2|chr1 (187424570-187424372) | |
| 153-348, gnl|hg17|chr11 (72798154-72798388) | |
| 153-348, gnl|Hg17|chr11 (72798370-72798177) | |
| 153-348, gnl|loxAfr1|scaffold_40273 (10240-10471) | |
| 153-348, gnl|mm7|chr7 (96880456-96880224) | |
| 153-348, gnl|Mm7|chr7 (96880240-96880432) | |
| 153-348, gnl|monDom2|scaffold_74 (4117278-4117057) | |
| 153-348, gnl|oryCun1|scaffold_205447 (80190-80423) | |
| 153-348, gnl|panTro1|chr9 (74077618-74077855) | |
| 153-348, gnl|rheMac2|chr14 (71527466-71527700) | |
| 153-348, gnl|rn3|chr1 (158361413-158361193) | |
| 153-348, gnl|tetNig1|chrUn_random (52783414-52783223) | |
| 153-348, gnl|xenTro1|scaffold_1545 (51430-51207) | |
| 472-924, gnl|bosTau2|chr2 (465559-465092) | |
| 472-924, gnl|Hg17|chr2 (131643757-131643305) | |
| 472-924, gnl|Mm7|chr1 (35040628-35040181) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 153-348, gnl|bosTau2|chr15 (41754985-41754791) | |
| 153-348, gnl|canFam2|chr21 (27827454-27827219) | |
| 153-348, gnl|danRer3|chr18 (1056948-1056741) | |
| 153-348, gnl|dasNov1|scaffold_17147 (51596-51830) | |
| 153-348, gnl|echTel1|scaffold_292096 (8271-8075) | |
| 153-348, gnl|fr1|chrUn (220453461-220453672) | |
| 153-348, gnl|galGal2|chr1 (187424570-187424372) | |
| 153-348, gnl|hg17|chr11 (72798154-72798388) | |
| 153-348, gnl|Hg17|chr11 (72798370-72798177) | |
| 153-348, gnl|loxAfr1|scaffold_40273 (10240-10471) | |
| 153-348, gnl|mm7|chr7 (96880456-96880224) | |
| 153-348, gnl|Mm7|chr7 (96880240-96880432) | |
| 153-348, gnl|monDom2|scaffold_74 (4117278-4117057) | |
| 153-348, gnl|oryCun1|scaffold_205447 (80190-80423) | |
| 153-348, gnl|panTro1|chr9 (74077618-74077855) | |
| 153-348, gnl|rheMac2|chr14 (71527466-71527700) | |
| 153-348, gnl|rn3|chr1 (158361413-158361193) | |
| 153-348, gnl|tetNig1|chrUn_random (52783414-52783223) | |
| 153-348, gnl|xenTro1|scaffold_1545 (51430-51207) | |
| 472-924, gnl|bosTau2|chr2 (465559-465092) | |
| 472-924, gnl|Hg17|chr2 (131643757-131643305) | |
| 472-924, gnl|Mm7|chr1 (35040628-35040181) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) | |
| pla (0.133672) | |
| nmm (0.132802) |