Non-Coding RNA Search

Ss1.1-Pig4-TMW8017B05.3

Sequence:


               
               AAAAAGGACTTAAAAAAAATGATTCCAAAAGCACTAGTAAAAACTCGGACTCAGTTCAGA
AATTACCTAAGGTGAATGAAAACAAGTTGGAGAAGCTTCTGCCAGCCGGAGCCGATTCAG
CCAAACCGAAAAAGGTCCCCAGTGAGGTGTTGCCAGTGTTACCAGACCTTCCATTACCTG
TGATACAGGCCAATTACCGTCCGCTTCCTCCCCTTGACTTGATATCTTCCTTTCAACCAA
AGCGAAGAGCATTCTCCTCACCCCAGGAAGAGGAAGAAGCTGGATTCACGGGACGAAGAA
TGAATTCTAAGATGCAAGTATATTCTGGTTCCAAGTGTGCCTATCTTCCCAAGATGATGA
CCTTGCATGAGCAGTGCATCCGAGTACTTAAAAACAACATCGACTCAATCTTTGAAGTGG
GAGGCGTCCCGTATTCTGTTCTTGAACCTGTTCTAGAGAGGTGTACACCTGATCAGTTGT
ATCGCATAGAGGAATACAATCATGTATTAATTGAAGAAACAGATCAATTATGGAAAGTCC
ATTGTCACCGAGACTTTAAGGATGAAAGGCCAGAAGAGTATGAGTCGTGGCGGGAGATGT
ACCTACGGCTTCAGGATGCCCGAGAGCAGCGGCTACGAGTCCTCACAAAGAATATCCGAT
CTGCACACGCCAATAAGCCCAAAGGCCGACAAGCAAAAATGGCCTTTGTCAACTCTGTGG
CCAAACCACCTCGTGATGTTCGAAGGAGGCAAGAGAAGTTTGGAACAGGAGGAGCAGCTG
TGCCTGAGAAAATCCGGATCAAGCCGGCACCGTACCCTGCAGGAAGCAGCCGTGCACCCT
TCAGCAGTGGCAGCAGCAACAGCTTTAACGCTAGCCCGGAGGAGCCAGCCTATGACGGCC
CGAGCACAAGCGGTGTCCACTCTGCACCTATGATCAGCAACACTGTTTCCTATGACCCTA
GGAAACCGACTGTGAAGAAAATTGCCCCAATGATGGCCAAGACGATTAAAGCTTTCAAGA
ATAGATTCTCCCGACGATAAACTGAGGACTTACCTTGGAAATGAAATTTGGGGGGGGATG
AATTCGAAGACAGTGGGGGTTGAGGAATGGAACTTCCAAAGGAGACCGGACTCTGGCTTC
ATGGAACCATTTTGGTCTCTTGAGTCCTGCACAGTCCGCAGGGGTTGTGCCTGCACCTGT
GTCCGCAGCCACTGCCTCCCCGCCTGGCGAGCACTTCAGAGTTCTGAAGAAGATGTGAAG
CCTCATTCTCACTGAGGATTTTAAGGTCAATTGTACCTTTGTTGTTAATTAGCTTCTTTA
TAAACTATAAGACATAGTTTTAATTAATAAATATTGCCCCCAGATTGTATTTATATTACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGGACTTAAAAAAAATGATTCCAAAAGCACTAGTAAAAACTCGGACTCAGTTCAGA
AATTACCTAAGGTGAATGAAAACAAGTTGGAGAAGCTTCTGCCAGCCGGAGCCGATTCAG
CCAAACCGAAAAAGGTCCCCAGTGAGGTGTTGCCAGTGTTACCAGACCTTCCATTACCTG
TGATACAGGCCAATTACCGTCCGCTTCCTCCCCTTGACTTGATATCTTCCTTTCAACCAA
AGCGAAGAGCATTCTCCTCACCCCAGGAAGAGGAAGAAGCTGGATTCACGGGACGAAGAA
TGAATTCTAAGATGCAAGTATATTCTGGTTCCAAGTGTGCCTATCTTCCCAAGATGATGA
CCTTGCATGAGCAGTGCATCCGAGTACTTAAAAACAACATCGACTCAATCTTTGAAGTGG
GAGGCGTCCCGTATTCTGTTCTTGAACCTGTTCTAGAGAGGTGTACACCTGATCAGTTGT
ATCGCATAGAGGAATACAATCATGTATTAATTGAAGAAACAGATCAATTATGGAAAGTCC
ATTGTCACCGAGACTTTAAGGATGAAAGGCCAGAAGAGTATGAGTCGTGGCGGGAGATGT
ACCTACGGCTTCAGGATGCCCGAGAGCAGCGGCTACGAGTCCTCACAAAGAATATCCGAT
CTGCACACGCCAATAAGCCCAAAGGCCGACAAGCAAAAATGGCCTTTGTCAACTCTGTGG
CCAAACCACCTCGTGATGTTCGAAGGAGGCAAGAGAAGTTTGGAACAGGAGGAGCAGCTG
TGCCTGAGAAAATCCGGATCAAGCCGGCACCGTACCCTGCAGGAAGCAGCCGTGCACCCT
TCAGCAGTGGCAGCAGCAACAGCTTTAACGCTAGCCCGGAGGAGCCAGCCTATGACGGCC
CGAGCACAAGCGGTGTCCACTCTGCACCTATGATCAGCAACACTGTTTCCTATGACCCTA
GGAAACCGACTGTGAAGAAAATTGCCCCAATGATGGCCAAGACGATTAAAGCTTTCAAGA
ATAGATTCTCCCGACGATAAACTGAGGACTTACCTTGGAAATGAAATTTGGGGGGGGATG
AATTCGAAGACAGTGGGGGTTGAGGAATGGAACTTCCAAAGGAGACCGGACTCTGGCTTC
ATGGAACCATTTTGGTCTCTTGAGTCCTGCACAGTCCGCAGGGGTTGTGCCTGCACCTGT
GTCCGCAGCCACTGCCTCCCCGCCTGGCGAGCACTTCAGAGTTCTGAAGAAGATGTGAAG
CCTCATTCTCACTGAGGATTTTAAGGTCAATTGTACCTTTGTTGTTAATTAGCTTCTTTA
TAAACTATAAGACATAGTTTTAATTAATAAATATTGCCCCCAGATTGTATTTATATTACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61879283|ref|XP_590316.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879283|ref|XP_590316.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               36-1376, gnl|bosTau2|chr24 (38650583-38651880)
               

               
               36-1376, gnl|Hg17|chr18 (42814382-42808273)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-1376, gnl|bosTau2|chr24 (38650583-38651880)
               

               
               36-1376, gnl|Hg17|chr18 (42814382-42808273)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               duo (0.172801)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

	36-1376, gnl\|bosTau2\|chr24 (38650583-38651880)
	36-1376, gnl\|Hg17\|chr18 (42814382-42808273)