Non-Coding RNA Search

Ss1.1-Pig4-TMW8017B19.5

Sequence:


               
               GCAGCGCGGTGGTCAGCATGTCCGAAAGTGGGGAGACGCATGAGGACTCAGCGGGAGAGG
GCATTGCCGCCGCCGGCTCCTTCAGCTTCAGCTCGGAACCCACGCTGGAGGACATCCGCC
GCCTCCATGCCGAGTTTGCTGCTGAACGAGACTGGGACCAGTTCCATCAGCCTCGGAACC
TCCTCCTGGCCTTGGTGGGAGAAGTGGGAGAACTGGCAGAGCTCTTTCAGTGGAAGCCCG
ATGAGGAGCCGGGGCCCCAAGCCTGGTCCCCCAGGGAACGAGCAGCGCTTCAAGAGGAGC
TGAGCGATGTCCTCATCTACCTGGTAGCATTAGCAGCCCGCTGCCGGGTGGATCTGCCCC
AAGCTGTGCTTTCGAAGATGGACACTAACCGGCGACGCTACCCAGCACATCTGTCGCGCG
GCTCGGCCCGCAAGTATACAGACCTGCCCCGTGGGGCCACCTCAGACCAGGCTGTGACGC
CTGCAGACCTCGCCTGTGAGTCCACAGGTCAGGCCTCAATCTAGAAACACGGGCACAGAC
CCTGCAATCAGCAATAGCATCTAACGAGCAAAGGGTGCTGGGCCATGAGACCTCATTCTA
GTCCTTTTTTAACAGATTCACGGGCCTGAGGGGCTGCCCTCCTTGAGGTCTGAGGCCCAA
GGACCTCCAGAGGATAGCCTCCTGGTATTTTCTCCCTCAATAAAAGTTTTGGTTAGCAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCGCGGTGGTCAGCATGTCCGAAAGTGGGGAGACGCATGAGGACTCAGCGGGAGAGG
GCATTGCCGCCGCCGGCTCCTTCAGCTTCAGCTCGGAACCCACGCTGGAGGACATCCGCC
GCCTCCATGCCGAGTTTGCTGCTGAACGAGACTGGGACCAGTTCCATCAGCCTCGGAACC
TCCTCCTGGCCTTGGTGGGAGAAGTGGGAGAACTGGCAGAGCTCTTTCAGTGGAAGCCCG
ATGAGGAGCCGGGGCCCCAAGCCTGGTCCCCCAGGGAACGAGCAGCGCTTCAAGAGGAGC
TGAGCGATGTCCTCATCTACCTGGTAGCATTAGCAGCCCGCTGCCGGGTGGATCTGCCCC
AAGCTGTGCTTTCGAAGATGGACACTAACCGGCGACGCTACCCAGCACATCTGTCGCGCG
GCTCGGCCCGCAAGTATACAGACCTGCCCCGTGGGGCCACCTCAGACCAGGCTGTGACGC
CTGCAGACCTCGCCTGTGAGTCCACAGGTCAGGCCTCAATCTAGAAACACGGGCACAGAC
CCTGCAATCAGCAATAGCATCTAACGAGCAAAGGGTGCTGGGCCATGAGACCTCATTCTA
GTCCTTTTTTAACAGATTCACGGGCCTGAGGGGCTGCCCTCCTTGAGGTCTGAGGCCCAA
GGACCTCCAGAGGATAGCCTCCTGGTATTTTCTCCCTCAATAAAAGTTTTGGTTAGCAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57087835|ref|XP_547022.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57087835|ref|XP_547022.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               426-701, - strand, RNAz p=0.983211

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               426-701, - strand, RNAz p=0.983211

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-134, gnl|bosTau2|chr25 (24377398-24377531)
               

               
               1-134, gnl|Hg17|chr16 (30348816-30348683)
               

               
               1-134, gnl|Mm7|chr7 (123357198-123357062)
               


               
               227-718, gnl|bosTau2|chr25 (24380543-24381034)
               

               
               227-718, gnl|Hg17|chr16 (30343355-30342860)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-134, gnl|bosTau2|chr25 (24377398-24377531)
               

               
               1-134, gnl|Hg17|chr16 (30348816-30348683)
               

               
               1-134, gnl|Mm7|chr7 (123357198-123357062)
               


               
               227-718, gnl|bosTau2|chr25 (24380543-24381034)
               

               
               227-718, gnl|Hg17|chr16 (30343355-30342860)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               elu (0.385356)
               

               
               fty (0.17584)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               fty (0.17584)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

	1-134, gnl\|bosTau2\|chr25 (24377398-24377531)
	1-134, gnl\|Hg17\|chr16 (30348816-30348683)
	1-134, gnl\|Mm7\|chr7 (123357198-123357062)

	227-718, gnl\|bosTau2\|chr25 (24380543-24381034)
	227-718, gnl\|Hg17\|chr16 (30343355-30342860)

	elu (0.385356)
	fty (0.17584)
	ssp (0.13552)
	nmm (0.132802)
	ecc (0.115035)