Ss1.1-Pig4-TMW8017C17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGAGAGTTTTCCTTTGAGGCCTGGAATGCCAAAATCACGGACCTAAAACAGAAAGTTG AAAATCTTTTCAATGAAAAATGCGGTGAAGCTCTTGGCCTTAAGCAAGCTGTGAAAGTGC CGTTTGCATTATTTGAGTCTTTCCCAGAAGATTTTTATGTGGAGGGCTTACCCGAGGGCG TACCATTCCGACGACCATCTACTTTTGGCATTCCACGGCTGGAGAAGATCCTCCGAAACA AAGCCAAAATTAAGTTCATCATTAAAAAGCCTGAAATGTTTGAGACAGCAATTAAGGAGA GCACCTCCTCCTCTAAGAGCCCTCCAAGAAAAATAAATTCATCCCCCAATGTTAATACTA CTGCATCAGGAGTTGAAGATCTTAACATCATTCAGGTGACAATTCCAGATGATGATAATG AAAGACTGTCAAAAGTGGAAAAAGCGAGACAGCTACGAGAACAGGTTAACGACCTCTTCA GTCGAAAATTTGGTGAAGCGATTGGTATGGGTTTCCCTGTGAAAGTTCCCTACAGGAAAA TCACAATTAACCCTGGCTGTGTGGTGGTTGACGGCATGCCTCCCGGAGTGTCATTCAAAG CCCCCAGCTATCTGGAGATCAGCTCCATGAGAAGGATCTTAGATTCGGCTGAGTTCATTA AATTCACGGTCATTAGACCATTTCCAGGACTTGTGATTAATAACCAGTTGGTTGATCAGA ATGAATCAGAAGGCCCAGTGATCCAAGAATCATCTGAACCAAGCCAGTTGGAGGTTCCTG CAACAGAAGAAATAAAGGAGACTGATGGAAACTCCCAAATCAAGCAAGAACCAGACCCTA CGTGGTAGACCTCTTCCCTCCTAGGCTTACAGTATCAGTGGGTGAGAAGAGCTTTTCGGA CCTGTTACTGCCCCGAGCTGTGTAATATACTTGTATAACAGAAATACCTTCTATACAAAC CTTTTTTTCTACTTTTAGATAGAAATGTCTACTTTTTCAGCAGTTCTGTGAATTGAATTA AAGAGCAGAGTGACTGTAGATTTGGAATGGCTGGTTTACTTTGGATGTATTATAAGGATT TTACAGCAGTGCTGGAAAAACGACAGGGAAAATGACAGGGATGAACCTCATGAGATTTTG TACGTATTCGGCAGAGCCTTCCGCTGTGGTGTTTCTTTTCCAGTCAAGGGACGCTATCTC CTCCTGGAACATCTCAGCTTCTGCAGTGAAGAGAACACCTGTGATAGTTCAGTTCCTTAG TTTTTCTATTTGAAAAATCATTTAAATGATCCTTTTGTTCACGACTCTCCTTGATGACTG AGTGAACAGTTAGTATCTGTATATTTGACTAAACCTTTTCCTAAGCTCTCTATCATGGTT CGTATGTTTTTTATCATAATTAAACAACCAACCGTCTGGATCACCTGACAGCCAGTAAGA GGTCAGTATCTCAGCGTGTGGCTTGTCGATGGAACCCGGCGAACCTCTTCCATCCACGTT TCCTTTGCATCTAAATCAAACGCATGGTGTACCAGCCGTTTCAGACCAGGTAGGAGTGTT TGGGCAAAAGCTGAACGACACTAAAGCCTCACTCTCCCGCAGCCCGTTGCGGGGACTCCT TCGGAACACTGGTCCAGCTTGGATCAGACAGACTCAAGGGGGTTTCATCACCTTCACGAC TTTGCAGATTCTCCTTCTGACAGTGAGGCTCCAGTGTGGGGAGTGAGGGGTCAGTTCGCT CATGACGCACCCTCTGATATTCTGCGCCGTTTGTAGGAGAATCTTACATGTGTTGAGATT TCACAAACAGTAAGACTTGTAAAATACCAGCTATATGAAAAGCTAGAGTATGTGATGGCC TAGAGTGTTCATTAGCTTTATCGCAATATTCACAATGGAGAATTCTATTACATGGTAGCA GAAATAGGCATTTTTATGTGTTGCTTATATTTTACCTCAAATTAAATTGTAGATATAGGG TAATAAATAAAATCCATCCATGCCTTTCAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGAGAGTTTTCCTTTGAGGCCTGGAATGCCAAAATCACGGACCTAAAACAGAAAGTTG AAAATCTTTTCAATGAAAAATGCGGTGAAGCTCTTGGCCTTAAGCAAGCTGTGAAAGTGC CGTTTGCATTATTTGAGTCTTTCCCAGAAGATTTTTATGTGGAGGGCTTACCCGAGGGCG TACCATTCCGACGACCATCTACTTTTGGCATTCCACGGCTGGAGAAGATCCTCCGAAACA AAGCCAAAATTAAGTTCATCATTAAAAAGCCTGAAATGTTTGAGACAGCAATTAAGGAGA GCACCTCCTCCTCTAAGAGCCCTCCAAGAAAAATAAATTCATCCCCCAATGTTAATACTA CTGCATCAGGAGTTGAAGATCTTAACATCATTCAGGTGACAATTCCAGATGATGATAATG AAAGACTGTCAAAAGTGGAAAAAGCGAGACAGCTACGAGAACAGGTTAACGACCTCTTCA GTCGAAAATTTGGTGAAGCGATTGGTATGGGTTTCCCTGTGAAAGTTCCCTACAGGAAAA TCACAATTAACCCTGGCTGTGTGGTGGTTGACGGCATGCCTCCCGGAGTGTCATTCAAAG CCCCCAGCTATCTGGAGATCAGCTCCATGAGAAGGATCTTAGATTCGGCTGAGTTCATTA AATTCACGGTCATTAGACCATTTCCAGGACTTGTGATTAATAACCAGTTGGTTGATCAGA ATGAATCAGAAGGCCCAGTGATCCAAGAATCATCTGAACCAAGCCAGTTGGAGGTTCCTG CAACAGAAGAAATAAAGGAGACTGATGGAAACTCCCAAATCAAGCAAGAACCAGACCCTA CGTGGTAGACCTCTTCCCTCCTAGGCTTACAGTATCAGTGGGTGAGAAGAGCTTTTCGGA CCTGTTACTGCCCCGAGCTGTGTAATATACTTGTATAACAGAAATACCTTCTATACAAAC CTTTTTTTCTACTTTTAGATAGAAATGTCTACTTTTTCAGCAGTTCTGTGAATTGAATTA AAGAGCAGAGTGACTGTAGATTTGGAATGGCTGGTTTACTTTGGATGTATTATAAGGATT TTACAGCAGTGCTGGAAAAACGACAGGGAAAATGACAGGGATGAACCTCATGAGATTTTG TACGTATTCGGCAGAGCCTTCCGCTGTGGTGTTTCTTTTCCAGTCAAGGGACGCTATCTC CTCCTGGAACATCTCAGCTTCTGCAGTGAAGAGAACACCTGTGATAGTTCAGTTCCTTAG TTTTTCTATTTGAAAAATCATTTAAATGATCCTTTTGTTCACGACTCTCCTTGATGACTG AGTGAACAGTTAGTATCTGTATATTTGACTAAACCTTTTCCTAAGCTCTCTATCATGGTT CGTATGTTTTTTATCATAATTAAACAACCAACCGTCTGGATCACCTGACAGCCAGTAAGA GGTCAGTATCTCAGCGTGTGGCTTGTCGATGGAACCCGGCGAACCTCTTCCATCCACGTT TCCTTTGCATCTAAATCAAACGCATGGTGTACCAGCCGTTTCAGACCAGGTAGGAGTGTT TGGGCAAAAGCTGAACGACACTAAAGCCTCACTCTCCCGCAGCCCGTTGCGGGGACTCCT TCGGAACACTGGTCCAGCTTGGATCAGACAGACTCAAGGGGGTTTCATCACCTTCACGAC TTTGCAGATTCTCCTTCTGACAGTGAGGCTCCAGTGTGGGGAGTGAGGGGTCAGTTCGCT CATGACGCACCCTCTGATATTCTGCGCCGTTTGTAGGAGAATCTTACATGTGTTGAGATT TCACAAACAGTAAGACTTGTAAAATACCAGCTATATGAAAAGCTAGAGTATGTGATGGCC TAGAGTGTTCATTAGCTTTATCGCAATATTCACAATGGAGAATTCTATTACATGGTAGCA GAAATAGGCATTTTTATGTGTTGCTTATATTTTACCTCAAATTAAATTGTAGATATAGGG TAATAAATAAAATCCATCCATGCCTTTCAAAAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 123-242, + strand, RNAz p=0.531262 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 123-242, + strand, RNAz p=0.531262 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 84-269, gnl|bosTau2|chr25 (28754280-28754465) | |
| 84-269, gnl|canFam2|chr6 (8738104-8737886) | |
| 84-269, gnl|canFam2|chr6 (8737886-8738104) | |
| 84-269, gnl|canFam2|chr6 (8738104-8737886) | |
| 84-269, gnl|dasNov1|scaffold_28589 (1877-1660) | |
| 84-269, gnl|dasNov1|scaffold_28589 (1660-1877) | |
| 84-269, gnl|dasNov1|scaffold_28589 (1877-1660) | |
| 84-269, gnl|echTel1|scaffold_47807 (3125-2916) | |
| 84-269, gnl|echTel1|scaffold_47807 (2916-3125) | |
| 84-269, gnl|echTel1|scaffold_47807 (3125-2916) | |
| 84-269, gnl|galGal2|chr19 (2435312-2435114) | |
| 84-269, gnl|galGal2|chr19 (2435114-2435312) | |
| 84-269, gnl|galGal2|chr19 (2435312-2435114) | |
| 84-269, gnl|hg17|chr7 (72054561-72054778) | |
| 84-269, gnl|hg17|chr7 (74056963-74057180) | |
| 84-269, gnl|hg17|chr7 (73608247-73608464) | |
| 84-269, gnl|Hg17|chr7 (73608255-73608440) | |
| 84-269, gnl|loxAfr1|scaffold_39618 (8216-7999) | |
| 84-269, gnl|loxAfr1|scaffold_39618 (7999-8216) | |
| 84-269, gnl|loxAfr1|scaffold_39618 (8216-7999) | |
| 84-269, gnl|mm7|chr5 (133494067-133493851) | |
| 84-269, gnl|mm7|chr5 (133493851-133494067) | |
| 84-269, gnl|mm7|chr5 (133494067-133493851) | |
| 84-269, gnl|Mm7|chr5 (133494057-133493872) | |
| 84-269, gnl|monDom2|scaffold_81 (6416979-6416780) | |
| 84-269, gnl|monDom2|scaffold_81 (6416780-6416979) | |
| 84-269, gnl|monDom2|scaffold_81 (6416979-6416780) | |
| 84-269, gnl|oryCun1|scaffold_147021 (12419-12624) | |
| 84-269, gnl|oryCun1|scaffold_147021 (12624-12419) | |
| 84-269, gnl|oryCun1|scaffold_147021 (12419-12624) | |
| 84-269, gnl|panTro1|chr6 (75354570-75354781) | |
| 84-269, gnl|panTro1|chr6 (75354781-75354570) | |
| 84-269, gnl|panTro1|chr6 (75354570-75354781) | |
| 84-269, gnl|rheMac2|chr3 (52203820-52204037) | |
| 84-269, gnl|rheMac2|chr3 (52204037-52203820) | |
| 84-269, gnl|rheMac2|chr3 (52203820-52204037) | |
| 84-269, gnl|rn3|chr12 (23402207-23402423) | |
| 84-269, gnl|rn3|chr12 (23402423-23402207) | |
| 84-269, gnl|rn3|chr12 (23402207-23402423) | |
| 84-269, gnl|xenTro1|scaffold_21 (3016620-3016816) | |
| 84-269, gnl|xenTro1|scaffold_21 (3016816-3016620) | |
| 84-269, gnl|xenTro1|scaffold_21 (3016620-3016816) | |
| 492-676, gnl|bosTau2|chr25 (28757143-28757327) | |
| 492-676, gnl|Hg17|chr7 (73612828-73613012) | |
| 492-676, gnl|Mm7|chr5 (133491967-133491783) | |
| 1397-1950, gnl|bosTau2|chr1 (5173074-5172534) | |
| 1397-1950, gnl|Hg17|chr7 (72065389-72065925) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 84-269, gnl|bosTau2|chr25 (28754280-28754465) | |
| 84-269, gnl|canFam2|chr6 (8738104-8737886) | |
| 84-269, gnl|canFam2|chr6 (8737886-8738104) | |
| 84-269, gnl|canFam2|chr6 (8738104-8737886) | |
| 84-269, gnl|dasNov1|scaffold_28589 (1877-1660) | |
| 84-269, gnl|dasNov1|scaffold_28589 (1660-1877) | |
| 84-269, gnl|dasNov1|scaffold_28589 (1877-1660) | |
| 84-269, gnl|echTel1|scaffold_47807 (3125-2916) | |
| 84-269, gnl|echTel1|scaffold_47807 (2916-3125) | |
| 84-269, gnl|echTel1|scaffold_47807 (3125-2916) | |
| 84-269, gnl|galGal2|chr19 (2435312-2435114) | |
| 84-269, gnl|galGal2|chr19 (2435114-2435312) | |
| 84-269, gnl|galGal2|chr19 (2435312-2435114) | |
| 84-269, gnl|hg17|chr7 (72054561-72054778) | |
| 84-269, gnl|hg17|chr7 (74056963-74057180) | |
| 84-269, gnl|hg17|chr7 (73608247-73608464) | |
| 84-269, gnl|Hg17|chr7 (73608255-73608440) | |
| 84-269, gnl|loxAfr1|scaffold_39618 (8216-7999) | |
| 84-269, gnl|loxAfr1|scaffold_39618 (7999-8216) | |
| 84-269, gnl|loxAfr1|scaffold_39618 (8216-7999) | |
| 84-269, gnl|mm7|chr5 (133494067-133493851) | |
| 84-269, gnl|mm7|chr5 (133493851-133494067) | |
| 84-269, gnl|mm7|chr5 (133494067-133493851) | |
| 84-269, gnl|Mm7|chr5 (133494057-133493872) | |
| 84-269, gnl|monDom2|scaffold_81 (6416979-6416780) | |
| 84-269, gnl|monDom2|scaffold_81 (6416780-6416979) | |
| 84-269, gnl|monDom2|scaffold_81 (6416979-6416780) | |
| 84-269, gnl|oryCun1|scaffold_147021 (12419-12624) | |
| 84-269, gnl|oryCun1|scaffold_147021 (12624-12419) | |
| 84-269, gnl|oryCun1|scaffold_147021 (12419-12624) | |
| 84-269, gnl|panTro1|chr6 (75354570-75354781) | |
| 84-269, gnl|panTro1|chr6 (75354781-75354570) | |
| 84-269, gnl|panTro1|chr6 (75354570-75354781) | |
| 84-269, gnl|rheMac2|chr3 (52203820-52204037) | |
| 84-269, gnl|rheMac2|chr3 (52204037-52203820) | |
| 84-269, gnl|rheMac2|chr3 (52203820-52204037) | |
| 84-269, gnl|rn3|chr12 (23402207-23402423) | |
| 84-269, gnl|rn3|chr12 (23402423-23402207) | |
| 84-269, gnl|rn3|chr12 (23402207-23402423) | |
| 84-269, gnl|xenTro1|scaffold_21 (3016620-3016816) | |
| 84-269, gnl|xenTro1|scaffold_21 (3016816-3016620) | |
| 84-269, gnl|xenTro1|scaffold_21 (3016620-3016816) | |
| 492-676, gnl|bosTau2|chr25 (28757143-28757327) | |
| 492-676, gnl|Hg17|chr7 (73612828-73613012) | |
| 492-676, gnl|Mm7|chr5 (133491967-133491783) | |
| 1397-1950, gnl|bosTau2|chr1 (5173074-5172534) | |
| 1397-1950, gnl|Hg17|chr7 (72065389-72065925) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| clu (0.717875) | |
| pla (0.534688) | |
| pty (0.428143) | |
| cty (0.41632) | |
| nmm (0.398406) | |
| elu (0.385356) | |
| ese (0.379507) | |
| tra (0.369276) | |
| cut (0.339847) | |
| fce (0.271592) | |
| ret (0.257467) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| sag (0.182715) | |
| rec (0.17307) | |
| duo (0.172801) | |
| cki (0.165235) | |
| cje (0.165235) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| cov (0.132153) | |
| sug (0.127291) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.717875) | |
| pla (0.534688) | |
| pty (0.428143) | |
| cty (0.41632) | |
| nmm (0.398406) | |
| elu (0.385356) | |
| ese (0.379507) | |
| tra (0.369276) | |
| cut (0.339847) | |
| fce (0.271592) | |
| ret (0.257467) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| sag (0.182715) | |
| rec (0.17307) | |
| duo (0.172801) | |
| cki (0.165235) | |
| cje (0.165235) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| cov (0.132153) | |
| sug (0.127291) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| jej (0.0989218) |