Ss1.1-Pig4-TMW8017C23.5
|
GCACAGCCGAGGGCCTGGGGCCAGCTCTTCTTGCCCCTGGGCACTGCTCAGGGCGCTGGG
CACTCACTCATTTATGTAGAGAGGTGTTCCTGTGTCTGGTTCTCGGCTGGGTTTGGCCCT
TCTTCTTGGCACAGCTCCAGCAGAGGGGTCTGCGTTATCCAGGCCTGTCACCTCCCATAG
GGTAGCCACTGGCTTCTTGTGGCTGGCTAAGTGAATTAAAGCTGGAAACATACTTCTGCA
GTTGCCTTTGCCACATTCAGAGTTCAGGAGCCACAGGTGGCTGCCTAGTGGCTCTAATGA
ATACCCAGCAAGGCGGTTGTGAGCACATCCCTCATCACAGAGAGGCTGCGGGACCTGCCA
CTCCAGACGGCTCCTCAGAGAGCCTCTCATGGGACCATAAAGCCGACAAGATCCCACCTC
AAGCCAGGCTAGGAGCTCCCTCTCCACCCATTGCTGGCACCCCGACCCCTGCCTGGGGTT
CTCTTGGAGGCAGGCCCTGGGGTCAGAAGCTGAGCAGAGGTGCCAGCAGCCTTGTCCTGC
ACTGATTGATCTCTGGCTTGAGGGCCATCGGACTGGATAATTGGGCACCTTTGACCCCAT
CACCACGCCGGTGAGCTCACCATGGAGCCTCCAGCTGCCTGCGACGGAAACATCTGCAGG
CACGCACTGGGGACCTACCACACTCATCTCAAGGCCAAGCCCCTCCCACATCAACCCCCA
CACCCCTGCAGGAAGCCTACGCCAGCACCTACCAGCAGGCTGGACACTCCGCTGGGCACT
GTGGGCTGCAGACTCCCGTGGGAAGAATCCTGCCCTTGACTGAGAACTTGCCTCTTTGAA
GTGCCCACCCCATATGGTTGGGTATCAGGGCCCTGGAATCCCTGGATCCCGGAGGCTGGG
ATGCTGCTCTCAGGATGCAGGGCCAGTGTCTTCCAAGGTCCAACTAGCTGGCCAGGTGGA
AACTCAACACAGCTAAGGACAGGAGTCTGCACGACGTGGGTGGATGCCTGTGTGACTTTG
ACATTGACCTGTACTTTCTTGTGGGCAAATAAAAGCCAAGAGACCTCCAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GCACAGCCGAGGGCCTGGGGCCAGCTCTTCTTGCCCCTGGGCACTGCTCAGGGCGCTGGG
CACTCACTCATTTATGTAGAGAGGTGTTCCTGTGTCTGGTTCTCGGCTGGGTTTGGCCCT
TCTTCTTGGCACAGCTCCAGCAGAGGGGTCTGCGTTATCCAGGCCTGTCACCTCCCATAG
GGTAGCCACTGGCTTCTTGTGGCTGGCTAAGTGAATTAAAGCTGGAAACATACTTCTGCA
GTTGCCTTTGCCACATTCAGAGTTCAGGAGCCACAGGTGGCTGCCTAGTGGCTCTAATGA
ATACCCAGCAAGGCGGTTGTGAGCACATCCCTCATCACAGAGAGGCTGCGGGACCTGCCA
CTCCAGACGGCTCCTCAGAGAGCCTCTCATGGGACCATAAAGCCGACAAGATCCCACCTC
AAGCCAGGCTAGGAGCTCCCTCTCCACCCATTGCTGGCACCCCGACCCCTGCCTGGGGTT
CTCTTGGAGGCAGGCCCTGGGGTCAGAAGCTGAGCAGAGGTGCCAGCAGCCTTGTCCTGC
ACTGATTGATCTCTGGCTTGAGGGCCATCGGACTGGATAATTGGGCACCTTTGACCCCAT
CACCACGCCGGTGAGCTCACCATGGAGCCTCCAGCTGCCTGCGACGGAAACATCTGCAGG
CACGCACTGGGGACCTACCACACTCATCTCAAGGCCAAGCCCCTCCCACATCAACCCCCA
CACCCCTGCAGGAAGCCTACGCCAGCACCTACCAGCAGGCTGGACACTCCGCTGGGCACT
GTGGGCTGCAGACTCCCGTGGGAAGAATCCTGCCCTTGACTGAGAACTTGCCTCTTTGAA
GTGCCCACCCCATATGGTTGGGTATCAGGGCCCTGGAATCCCTGGATCCCGGAGGCTGGG
ATGCTGCTCTCAGGATGCAGGGCCAGTGTCTTCCAAGGTCCAACTAGCTGGCCAGGTGGA
AACTCAACACAGCTAAGGACAGGAGTCTGCACGACGTGGGTGGATGCCTGTGTGACTTTG
ACATTGACCTGTACTTTCTTGTGGGCAAATAAAAGCCAAGAGACCTCCAAAAAAAAAAAA
AAAAAAAAAAAA
|
|
29-216, - strand, RNAz p=0.757142 |
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252-447, - strand, RNAz p=0.999255 |
|
257-368, - strand, RNAz p=0.999741 |
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600-716, - strand, RNAz p=0.907184 |
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603-704, - strand, RNAz p=0.514436 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
29-216, - strand, RNAz p=0.757142 |
|
252-447, - strand, RNAz p=0.999255 |
|
257-368, - strand, RNAz p=0.999741 |
|
600-716, - strand, RNAz p=0.907184 |
|
603-704, - strand, RNAz p=0.514436 |
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29-1066, gnl|bosTau2|chr5 (66692083-66693114) |
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29-1066, gnl|canFam2|chr10 (29480032-29479282) |
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29-1066, gnl|dasNov1|scaffold_80050 (4138-4763) |
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29-1066, gnl|echTel1|scaffold_323549 (6474-5894) |
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29-1066, gnl|hg17|chr22 (37016699-37017334) |
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29-1066, gnl|loxAfr1|scaffold_41783 (5330-4634) |
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29-1066, gnl|mm7|chr15 (79505420-79506053) |
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29-1066, gnl|Mm7|chr15 (79506303-79505434) |
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29-1066, gnl|oryCun1|scaffold_109586 (9009-8439) |
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29-1066, gnl|panTro1|chr23 (37234712-37235346) |
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29-1066, gnl|rheMac2|chr10 (82242135-82242764) |
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29-1066, gnl|rn3|chr7 (117439436-117440062) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
29-1066, gnl|bosTau2|chr5 (66692083-66693114) |
|
29-1066, gnl|canFam2|chr10 (29480032-29479282) |
|
29-1066, gnl|dasNov1|scaffold_80050 (4138-4763) |
|
29-1066, gnl|echTel1|scaffold_323549 (6474-5894) |
|
29-1066, gnl|hg17|chr22 (37016699-37017334) |
|
29-1066, gnl|loxAfr1|scaffold_41783 (5330-4634) |
|
29-1066, gnl|mm7|chr15 (79505420-79506053) |
|
29-1066, gnl|Mm7|chr15 (79506303-79505434) |
|
29-1066, gnl|oryCun1|scaffold_109586 (9009-8439) |
|
29-1066, gnl|panTro1|chr23 (37234712-37235346) |
|
29-1066, gnl|rheMac2|chr10 (82242135-82242764) |
|
29-1066, gnl|rn3|chr7 (117439436-117440062) |
|
fce (0.271592) |
|
nlu (0.191681) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
fce (0.271592) |
|
nlu (0.191681) |
|
nmm (0.132802) |
|
cov (0.132153) |
