Ss1.1-Pig4-TMW8017D03.5
|
CCCGCCCCCGCTCGCCATGTCGGGCTCCCCGGTGAAGCGGCAGAGGATGGAGAGCGCGCT
GGACCAGCTCAAGCAGTTCACTACCGTGGTGGCCGACACGGGCGACTTCAACGCCATCGA
CGAGTACAAGCCCCAGGATGCCACCACCAACCCTTCCCTGATCCTGGCCGCCGCGCAGAT
GCCCGCCTACCAGGAGCTGGTGGAGGAGGCCCTGGCCTACGGCAAGAGGCTGGGCGGGTC
ACAAGAGGAACAGGTTACAAACGCTGTCGATAAGCTTTTTGTGTTGTTTGGAGCCGAAAT
CCTCAAGAAAATTCCAGGCCGAGTATCCACGGAAGTGGATGCCAGGCTCTCCTTCGACAG
GGATGCCATGGTGGCCCGCGCCCGGCGCCTCATCGAGCTCTACAAGGAGGCCGGGGTCAG
CAAGGACCGCGTCCTCATAAAGCTGGCGTCCACCTGGGAAGGCATTCAGGCGGGAAAGGA
GCTGGAGGAGCAGCACGGCATCCATTGCAACATGACGCTGCTCTTCTCCTTCGCCCAGGC
CGTGGCCTGCGCCGAGGCGGGGGTGACGCTCATCTCCCCCTTCGTGGGCCGCATCCTCGA
CTGGCACGTGGCCAACACGGACCAGAAGTCCTACGAGCCCCTGGAGGACCCCGGCGTGAA
GAGCGTCACCAAGATCTACAACTATTACAAGAAGTTCGGCTACAAGACCATCGTCATGGG
CGCCTCCTTCCGCAACACGGGCGAGATCAAGGCCCTGGCGGGCTGCGACTTCCTCACCAT
CTCGCCCCAGCTCCTGGGGGAGCTGCTCAAAGACACCAGCAAGTTGGTGCCCATGCTCTC
GGCCAAGGCGGCCCAGGCCAGCCCCCTGGAGAAGGTCCACCTGGACGAGAAGGCCTTCCG
CTGGCTGCACAACGAGGACCGCATGGCTGTGGAGAAGCTGTCGGACGGGATCCGCAAGTT
TGCCGCAGACGCCGTGAAGCTGGAGCGGATGCTGACGGAACGAATGTTCAGCACAGAGAA
CGGCAAATAGCGCGGCGCCCAGGCGGGAGCGCAGAGCTGCGCCGACGACGGGGAGCTGGG
CTCTAACTGCACACGCCTTCTGAGGAATCCTGCATTTTCTACTAATTGGAGCGGGGACGA
ATCACAGATTCCTGATTGTCAAATTCTGCTCGGCACATTAAAGCCATCCCTTTTCCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCCGCCCCCGCTCGCCATGTCGGGCTCCCCGGTGAAGCGGCAGAGGATGGAGAGCGCGCT
GGACCAGCTCAAGCAGTTCACTACCGTGGTGGCCGACACGGGCGACTTCAACGCCATCGA
CGAGTACAAGCCCCAGGATGCCACCACCAACCCTTCCCTGATCCTGGCCGCCGCGCAGAT
GCCCGCCTACCAGGAGCTGGTGGAGGAGGCCCTGGCCTACGGCAAGAGGCTGGGCGGGTC
ACAAGAGGAACAGGTTACAAACGCTGTCGATAAGCTTTTTGTGTTGTTTGGAGCCGAAAT
CCTCAAGAAAATTCCAGGCCGAGTATCCACGGAAGTGGATGCCAGGCTCTCCTTCGACAG
GGATGCCATGGTGGCCCGCGCCCGGCGCCTCATCGAGCTCTACAAGGAGGCCGGGGTCAG
CAAGGACCGCGTCCTCATAAAGCTGGCGTCCACCTGGGAAGGCATTCAGGCGGGAAAGGA
GCTGGAGGAGCAGCACGGCATCCATTGCAACATGACGCTGCTCTTCTCCTTCGCCCAGGC
CGTGGCCTGCGCCGAGGCGGGGGTGACGCTCATCTCCCCCTTCGTGGGCCGCATCCTCGA
CTGGCACGTGGCCAACACGGACCAGAAGTCCTACGAGCCCCTGGAGGACCCCGGCGTGAA
GAGCGTCACCAAGATCTACAACTATTACAAGAAGTTCGGCTACAAGACCATCGTCATGGG
CGCCTCCTTCCGCAACACGGGCGAGATCAAGGCCCTGGCGGGCTGCGACTTCCTCACCAT
CTCGCCCCAGCTCCTGGGGGAGCTGCTCAAAGACACCAGCAAGTTGGTGCCCATGCTCTC
GGCCAAGGCGGCCCAGGCCAGCCCCCTGGAGAAGGTCCACCTGGACGAGAAGGCCTTCCG
CTGGCTGCACAACGAGGACCGCATGGCTGTGGAGAAGCTGTCGGACGGGATCCGCAAGTT
TGCCGCAGACGCCGTGAAGCTGGAGCGGATGCTGACGGAACGAATGTTCAGCACAGAGAA
CGGCAAATAGCGCGGCGCCCAGGCGGGAGCGCAGAGCTGCGCCGACGACGGGGAGCTGGG
CTCTAACTGCACACGCCTTCTGAGGAATCCTGCATTTTCTACTAATTGGAGCGGGGACGA
ATCACAGATTCCTGATTGTCAAATTCTGCTCGGCACATTAAAGCCATCCCTTTTCCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|42476292|ref|NP_113999.2| |
Protein identifier
|
gi|42476292|ref|NP_113999.2| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
105-239, gnl|bosTau2|chr29 (44774502-44774636) |
|
105-239, gnl|Hg17|chr11 (745869-746004) |
|
105-239, gnl|Mm7|chr7 (137813302-137813436) |
| |
|
343-478, gnl|bosTau2|chr29 (44776050-44776185) |
|
343-478, gnl|Hg17|chr11 (750119-750254) |
|
343-478, gnl|Mm7|chr7 (137817547-137817682) |
| |
|
649-865, gnl|bosTau2|chr29 (44777667-44777883) |
|
649-865, gnl|Hg17|chr11 (753742-753952) |
|
649-865, gnl|Mm7|chr7 (137819128-137819338) |
| |
|
997-1194, gnl|bosTau2|chr29 (44778332-44778531) |
|
997-1194, gnl|canFam2|chrUn (52809800-52809623) |
|
997-1194, gnl|dasNov1|scaffold_31014 (721-520) |
|
997-1194, gnl|echTel1|scaffold_296365 (3584-3761) |
|
997-1194, gnl|hg17|chr1 (54702597-54702800) |
|
997-1194, gnl|Hg17|chr11 (754812-755010) |
|
997-1194, gnl|mm7|chr10 (53116230-53116018) |
|
997-1194, gnl|Mm7|chr7 (137820005-137820226) |
|
997-1194, gnl|panTro1|chr1 (52987639-52987842) |
|
997-1194, gnl|rheMac2|chr1 (57400728-57400929) |
|
997-1194, gnl|rn3|chr1 (201747696-201747892) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
105-239, gnl|bosTau2|chr29 (44774502-44774636) |
|
105-239, gnl|Hg17|chr11 (745869-746004) |
|
105-239, gnl|Mm7|chr7 (137813302-137813436) |
| |
|
343-478, gnl|bosTau2|chr29 (44776050-44776185) |
|
343-478, gnl|Hg17|chr11 (750119-750254) |
|
343-478, gnl|Mm7|chr7 (137817547-137817682) |
| |
|
649-865, gnl|bosTau2|chr29 (44777667-44777883) |
|
649-865, gnl|Hg17|chr11 (753742-753952) |
|
649-865, gnl|Mm7|chr7 (137819128-137819338) |
| |
|
997-1194, gnl|bosTau2|chr29 (44778332-44778531) |
|
997-1194, gnl|canFam2|chrUn (52809800-52809623) |
|
997-1194, gnl|dasNov1|scaffold_31014 (721-520) |
|
997-1194, gnl|echTel1|scaffold_296365 (3584-3761) |
|
997-1194, gnl|hg17|chr1 (54702597-54702800) |
|
997-1194, gnl|Hg17|chr11 (754812-755010) |
|
997-1194, gnl|mm7|chr10 (53116230-53116018) |
|
997-1194, gnl|Mm7|chr7 (137820005-137820226) |
|
997-1194, gnl|panTro1|chr1 (52987639-52987842) |
|
997-1194, gnl|rheMac2|chr1 (57400728-57400929) |
|
997-1194, gnl|rn3|chr1 (201747696-201747892) |
|
cly (0.844493) |
|
elu (0.770713) |
|
nlu (0.766724) |
|
hyp (0.714184) |
|
duo (0.691204) |
|
nco (0.646935) |
|
col (0.585023) |
|
cga (0.558191) |
|
cov (0.528611) |
|
csp (0.483559) |
|
med (0.465008) |
|
ecc (0.46014) |
|
cli (0.458435) |
|
jca (0.45584) |
|
pty (0.428143) |
|
nca (0.410621) |
|
nep (0.36785) |
|
fty (0.351679) |
|
ton (0.351) |
|
cbl (0.344392) |
|
eli (0.303628) |
|
cag (0.302389) |
|
fat (0.294855) |
|
lnt (0.284616) |
|
fce (0.271592) |
|
bla (0.248694) |
|
eru (0.240096) |
|
clu (0.239292) |
|
ece (0.229305) |
|
mas (0.210305) |
|
cty (0.20816) |
|
hea (0.204499) |
|
jej (0.197844) |
|
eje (0.197668) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
nje (0.16592) |
|
spl (0.143184) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
sug (0.127291) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
nbm (0.0993246) |
|
cly (0.844493) |
|
elu (0.770713) |
|
nlu (0.766724) |
|
hyp (0.714184) |
|
duo (0.691204) |
|
nco (0.646935) |
|
col (0.585023) |
|
cga (0.558191) |
|
cov (0.528611) |
|
csp (0.483559) |
|
med (0.465008) |
|
ecc (0.46014) |
|
cli (0.458435) |
|
jca (0.45584) |
|
pty (0.428143) |
|
nca (0.410621) |
|
nep (0.36785) |
|
fty (0.351679) |
|
ton (0.351) |
|
cbl (0.344392) |
|
eli (0.303628) |
|
cag (0.302389) |
|
fat (0.294855) |
|
lnt (0.284616) |
|
fce (0.271592) |
|
bla (0.248694) |
|
eru (0.240096) |
|
clu (0.239292) |
|
ece (0.229305) |
|
mas (0.210305) |
|
cty (0.20816) |
|
hea (0.204499) |
|
jej (0.197844) |
|
eje (0.197668) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
nje (0.16592) |
|
spl (0.143184) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
sug (0.127291) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
nbm (0.0993246) |
