Non-Coding RNA Search

Ss1.1-Pig4-TMW8017D09.5

Sequence:


               
               GACATACTTTTGAGACTTGAAAGTTCAGAGCTGACATTAACCTTGTGAAGGCCAGTTTTC
CAGCCACTTGCTGCCCCAGCTCAACCCCCCACCCGACTCCCACATCCACATTGGCAGCTC
TGTTCCCCTTACCCTCCTCACTGCTGGGGTTTGTGACAGCAAATTTAGTTTACCCATAGG
TGGTATGGTCTGCAAAACTAACTCGAACCCAACCTCTTCGTTTTACAGAAGGGGAAACTG
AGGCTCAGAGGGCATTTTAAAATAGTGTTTGTTCACTATTTTGAGACTCAGTGTGGAATT
TTTAAGCACCTTATTTTAAGTCATCCGTTATCAGGAAAATCAAACCCCTGTTACCATGGA
GAGAAGCCAAATATGTTCAAAGGAAGAAGCACTTGGGATTTCTGATTTTTGCTGTGTGTT
TTGGCATACATCATGCAACTGGCCCTTTTATCACTGGGACATAACCAGACCTGGACACCT
TAAGGTCTAACAGTTTTAAGGGCATAGAACATTAAATTATTGAAGAATCTGAAAATTGTG
AATTGTTTTTTTCAACTGTTACGTTTTCAAGACTCAATGCTATAGACTGTTCTGTGGGAA
AAGATACCGTGTATATTCATGGATGGCATTTACAAAAATAAATGATGGTCTCCAGGGACT
CAAGATTGGTCCCAGTTTGTCAGTGAGGGTCCCTTTCTGAGTGACCCTATTATCAGTGTA
CCCAGCAACAAAACATGTAAGAAGTAGAAAGAACAAACTAACTTGGTTCTCTCATCCAAG
TGTACTGCAACCTTTTTATTTTTTCTGAGCCAGAATTGAGACATGTGAGTTGTGAATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACATACTTTTGAGACTTGAAAGTTCAGAGCTGACATTAACCTTGTGAAGGCCAGTTTTC
CAGCCACTTGCTGCCCCAGCTCAACCCCCCACCCGACTCCCACATCCACATTGGCAGCTC
TGTTCCCCTTACCCTCCTCACTGCTGGGGTTTGTGACAGCAAATTTAGTTTACCCATAGG
TGGTATGGTCTGCAAAACTAACTCGAACCCAACCTCTTCGTTTTACAGAAGGGGAAACTG
AGGCTCAGAGGGCATTTTAAAATAGTGTTTGTTCACTATTTTGAGACTCAGTGTGGAATT
TTTAAGCACCTTATTTTAAGTCATCCGTTATCAGGAAAATCAAACCCCTGTTACCATGGA
GAGAAGCCAAATATGTTCAAAGGAAGAAGCACTTGGGATTTCTGATTTTTGCTGTGTGTT
TTGGCATACATCATGCAACTGGCCCTTTTATCACTGGGACATAACCAGACCTGGACACCT
TAAGGTCTAACAGTTTTAAGGGCATAGAACATTAAATTATTGAAGAATCTGAAAATTGTG
AATTGTTTTTTTCAACTGTTACGTTTTCAAGACTCAATGCTATAGACTGTTCTGTGGGAA
AAGATACCGTGTATATTCATGGATGGCATTTACAAAAATAAATGATGGTCTCCAGGGACT
CAAGATTGGTCCCAGTTTGTCAGTGAGGGTCCCTTTCTGAGTGACCCTATTATCAGTGTA
CCCAGCAACAAAACATGTAAGAAGTAGAAAGAACAAACTAACTTGGTTCTCTCATCCAAG
TGTACTGCAACCTTTTTATTTTTTCTGAGCCAGAATTGAGACATGTGAGTTGTGAATTTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               135-330, - strand, RNAz p=0.991199
               

               
               410-527, + strand, RNAz p=0.902323

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               135-330, - strand, RNAz p=0.991199
               

               
               410-527, + strand, RNAz p=0.902323

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-839, gnl|bosTau2|chr7 (5775956-5775122)
               

               
               1-839, gnl|Hg17|chr19 (16522588-16521466)
               


               
               446-644, gnl|bosTau2|chr13 (48981819-48981625)
               

               
               446-644, gnl|Hg17|chr19 (16521856-16521664)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-839, gnl|bosTau2|chr7 (5775956-5775122)
               

               
               1-839, gnl|Hg17|chr19 (16522588-16521466)
               


               
               446-644, gnl|bosTau2|chr13 (48981819-48981625)
               

               
               446-644, gnl|Hg17|chr19 (16521856-16521664)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)

	135-330, - strand, RNAz p=0.991199
	410-527, + strand, RNAz p=0.902323

	1-839, gnl\|bosTau2\|chr7 (5775956-5775122)
	1-839, gnl\|Hg17\|chr19 (16522588-16521466)

	446-644, gnl\|bosTau2\|chr13 (48981819-48981625)
	446-644, gnl\|Hg17\|chr19 (16521856-16521664)

	fbs (0.175346)
	fco (0.157208)
	spl (0.143184)
	nmm (0.132802)
	cov (0.132153)