Non-Coding RNA Search

Ss1.1-Pig4-TMW8017D18.3

Sequence:


               
               GCCTGACCACCCGGAGGCCTGGCCCACTATGCCCGTGGGGCTGAACCATCTCTGCTGATC
CGGTACAGTCGGGGGCAGTGTGCTGGCTGGGCTTCAAGGGACAAGCCTGTGGCCTTGACA
CTGCTTGCTGGAGCCAGGAAAAGGACTGTGGCTTCCAGATTCTCACAGAGAGCTAGGCCT
TGGAGAACATCTTCATCACCTGGACTCTGCAGCCGTGGACTTCAGGGCACTGGAGGGCCC
TGCACAGAACCTCCACCCAGGCCAGTCCCCTGGCCTTGCTCACAGGCAGAACTCCCAGCC
CAGCCAGTCATCAGAATTTCTCTCCCGGCTGCCTCCATGGCAGGTGGGGATGCACAGGCA
GCTCCTGACCCCACCTAGACCCCAGGGTCATCACGCTGAGGACAAGCCAAGGCCTGGAGA
CCGTGATGCCCACTCAAGCCAAAGCCGCCAGGCCTGCCCAGTGGATCCACCCAGGAAAAG
GTGTGTCCTCCTGGCTCCCACCTGACCCTTCCCCAGACCACCCCTAGCTTTGTGAGTCAC
CCAGCACTTTATGCAGATGGACTGGCCCCGGTCCCAGCTGTTGCACTACAAGGCGCGTGT
ACATATCCATATCCACACACATACAGAAGTAGCCCCATGAGCGCGTGCGCTGTGCCTGCC
AGCCCGGACCCCCCGGGAGACACAGCCGTCTTATTTAAATGTTCTTTTAGGGACGGACAG
TATGAAGCACCGAGCTTCCTAAAACCCAGCACAGACGTTACAGTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGACCACCCGGAGGCCTGGCCCACTATGCCCGTGGGGCTGAACCATCTCTGCTGATC
CGGTACAGTCGGGGGCAGTGTGCTGGCTGGGCTTCAAGGGACAAGCCTGTGGCCTTGACA
CTGCTTGCTGGAGCCAGGAAAAGGACTGTGGCTTCCAGATTCTCACAGAGAGCTAGGCCT
TGGAGAACATCTTCATCACCTGGACTCTGCAGCCGTGGACTTCAGGGCACTGGAGGGCCC
TGCACAGAACCTCCACCCAGGCCAGTCCCCTGGCCTTGCTCACAGGCAGAACTCCCAGCC
CAGCCAGTCATCAGAATTTCTCTCCCGGCTGCCTCCATGGCAGGTGGGGATGCACAGGCA
GCTCCTGACCCCACCTAGACCCCAGGGTCATCACGCTGAGGACAAGCCAAGGCCTGGAGA
CCGTGATGCCCACTCAAGCCAAAGCCGCCAGGCCTGCCCAGTGGATCCACCCAGGAAAAG
GTGTGTCCTCCTGGCTCCCACCTGACCCTTCCCCAGACCACCCCTAGCTTTGTGAGTCAC
CCAGCACTTTATGCAGATGGACTGGCCCCGGTCCCAGCTGTTGCACTACAAGGCGCGTGT
ACATATCCATATCCACACACATACAGAAGTAGCCCCATGAGCGCGTGCGCTGTGCCTGCC
AGCCCGGACCCCCCGGGAGACACAGCCGTCTTATTTAAATGTTCTTTTAGGGACGGACAG
TATGAAGCACCGAGCTTCCTAAAACCCAGCACAGACGTTACAGTCTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               238-356, - strand, RNAz p=0.578713

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-356, - strand, RNAz p=0.578713

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               326-451, - strand, RNAmicro p=0.953225

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               326-451, - strand, RNAmicro p=0.953225

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-768, gnl|bosTau2|chr17 (23759586-23758807)
               

               
               1-768, gnl|Hg17|chr12 (131072131-131072904)
               

               
               1-768, gnl|Mm7|chr5 (109952385-109951613)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr17 (23759586-23758807)
               

               
               1-768, gnl|Hg17|chr12 (131072131-131072904)
               

               
               1-768, gnl|Mm7|chr5 (109952385-109951613)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	1-768, gnl\|bosTau2\|chr17 (23759586-23758807)
	1-768, gnl\|Hg17\|chr12 (131072131-131072904)
	1-768, gnl\|Mm7\|chr5 (109952385-109951613)