Ss1.1-Pig4-TMW8017F13.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGAACAAACCGTTTCTGGACTATGGAGATACAGTGATGCATGGACTAGAAGCCACCCCC AGCGCCTGGCTCGTTGGAGACTGTTTATAATATAAACGTATCGTGAGCTTCTTTCTTATA GTCACCCAGATGGGCTTCTGCTGCGTGTACATTGTGTTTCTGGCTGATAATTTAAAACAG GTAGTGGAAGCAGTTAACAGCACAACCAACAACTGCCATTACAATGAGACAGTGATTCTG ACGCCCACCATGGACTCTCGCCTCTACATGCTCACCTTCCTGCCCTTCCTGGCGCTGCTG GTTCTCATCCGGAACCTCAGGGTCCTGACCATCTTCTCCCTGTTGGCCAATGTCAGCATG CTCGTCAGCCTGATCATCATCACCCAGTACATCATCCAGGGAATTCCAGACCCAGGCCAG CTGCCATTGGCAGCAAATTGGAAGACCTACTCACTCTTCTTTGGAACAGCGGTTTTTTCA TTTGAAAGCATTGGTGTGGTTCTGCCCCTGGAAAACAAGATGAAGGATGCCCGCCGCTTC CCACTCATCCTGTCTTTGGGAATGTCCATCATCACTGCCCTGTATGTCAGCATCGGAACT CTGGGCTACTTGCGGTTCGGAAATGACATCAAGGCCAGCATAACCCTTAACCTGCCCAAC TGCTGGCTGTACCAGTCAGTCAAGATCCTCTACGTCATTGGCATCCTGTGCACCTACGCC CTGCAGTTCTACGTCCCTGCAGAAATCATCATTCCCTTTGCCATCTCCCAGGTGTCAAAG CGCTGGGCACTGCCTCTGGACTTGTCCATCCGCCTCGCCATGGTCTGCCTGACATGCGTC TTGGCCATCCTCGTCCCCCGCCTGGACCTGGTCCTCTCCCTGGTGGGCTCCGTGAGCAGC AGCGCCCTGGCCCTCATCATCCCGCCCCTCCTGGAGATCGCCACCTACTACTCGGAGGGC ATGAGCCCCCTCACCATCATCAAGGATGCCCTGATCAGCATCCTGGGCTTCTTGGGCTTT GTGATGGGGACCTACCAGGCCCTGGATGAGCTGATCCAGTCCCGAGACTCTCTCACCTTT TCCAACTCCACCCTTTTTATTCAGTAAAAAAAAAGCACTTCTTCTTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGAACAAACCGTTTCTGGACTATGGAGATACAGTGATGCATGGACTAGAAGCCACCCCC AGCGCCTGGCTCGTTGGAGACTGTTTATAATATAAACGTATCGTGAGCTTCTTTCTTATA GTCACCCAGATGGGCTTCTGCTGCGTGTACATTGTGTTTCTGGCTGATAATTTAAAACAG GTAGTGGAAGCAGTTAACAGCACAACCAACAACTGCCATTACAATGAGACAGTGATTCTG ACGCCCACCATGGACTCTCGCCTCTACATGCTCACCTTCCTGCCCTTCCTGGCGCTGCTG GTTCTCATCCGGAACCTCAGGGTCCTGACCATCTTCTCCCTGTTGGCCAATGTCAGCATG CTCGTCAGCCTGATCATCATCACCCAGTACATCATCCAGGGAATTCCAGACCCAGGCCAG CTGCCATTGGCAGCAAATTGGAAGACCTACTCACTCTTCTTTGGAACAGCGGTTTTTTCA TTTGAAAGCATTGGTGTGGTTCTGCCCCTGGAAAACAAGATGAAGGATGCCCGCCGCTTC CCACTCATCCTGTCTTTGGGAATGTCCATCATCACTGCCCTGTATGTCAGCATCGGAACT CTGGGCTACTTGCGGTTCGGAAATGACATCAAGGCCAGCATAACCCTTAACCTGCCCAAC TGCTGGCTGTACCAGTCAGTCAAGATCCTCTACGTCATTGGCATCCTGTGCACCTACGCC CTGCAGTTCTACGTCCCTGCAGAAATCATCATTCCCTTTGCCATCTCCCAGGTGTCAAAG CGCTGGGCACTGCCTCTGGACTTGTCCATCCGCCTCGCCATGGTCTGCCTGACATGCGTC TTGGCCATCCTCGTCCCCCGCCTGGACCTGGTCCTCTCCCTGGTGGGCTCCGTGAGCAGC AGCGCCCTGGCCCTCATCATCCCGCCCCTCCTGGAGATCGCCACCTACTACTCGGAGGGC ATGAGCCCCCTCACCATCATCAAGGATGCCCTGATCAGCATCCTGGGCTTCTTGGGCTTT GTGATGGGGACCTACCAGGCCCTGGATGAGCTGATCCAGTCCCGAGACTCTCTCACCTTT TCCAACTCCACCCTTTTTATTCAGTAAAAAAAAAGCACTTCTTCTTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 283-400, - strand, RNAz p=0.66356 | |
| 868-1126, - strand, RNAz p=0.93929 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 283-400, - strand, RNAz p=0.66356 | |
| 868-1126, - strand, RNAz p=0.93929 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 178-400, gnl|bosTau2|chr7 (43259971-43259752) | |
| 178-400, gnl|Hg17|chr5 (150695304-150695082) | |
| 178-400, gnl|Mm7|chr11 (55126832-55126610) | |
| 498-666, gnl|bosTau2|chr7 (43252981-43252813) | |
| 498-666, gnl|canFam2|chr4 (61156617-61156428) | |
| 498-666, gnl|danRer3|chr14 (25819237-25819062) | |
| 498-666, gnl|dasNov1|scaffold_18217 (46215-46404) | |
| 498-666, gnl|echTel1|scaffold_129609 (638-449) | |
| 498-666, gnl|fr1|chrUn (156984330-156984516) | |
| 498-666, gnl|galGal2|chrUn (53518288-53518477) | |
| 498-666, gnl|hg17|chr5 (150685038-150685227) | |
| 498-666, gnl|Hg17|chr5 (150685207-150685039) | |
| 498-666, gnl|loxAfr1|scaffold_223249 (421-232) | |
| 498-666, gnl|mm7|chr11 (55120988-55121177) | |
| 498-666, gnl|Mm7|chr11 (55121157-55120989) | |
| 498-666, gnl|monDom2|scaffold_6 (55091335-55091161) | |
| 498-666, gnl|oryCun1|scaffold_115567 (211-22) | |
| 498-666, gnl|panTro1|chr4 (157637765-157637954) | |
| 498-666, gnl|rheMac2|chr6 (147745772-147745961) | |
| 498-666, gnl|rn3|chr10 (40583212-40583401) | |
| 498-666, gnl|tetNig1|chr1_random (4234477-4234647) | |
| 498-666, gnl|xenTro1|scaffold_10 (3111236-3111042) | |
| 828-1126, gnl|bosTau2|chr7 (43247838-43247543) | |
| 828-1126, gnl|Hg17|chr5 (150676850-150676554) | |
| 828-1126, gnl|Mm7|chr11 (55116379-55116090) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 178-400, gnl|bosTau2|chr7 (43259971-43259752) | |
| 178-400, gnl|Hg17|chr5 (150695304-150695082) | |
| 178-400, gnl|Mm7|chr11 (55126832-55126610) | |
| 498-666, gnl|bosTau2|chr7 (43252981-43252813) | |
| 498-666, gnl|canFam2|chr4 (61156617-61156428) | |
| 498-666, gnl|danRer3|chr14 (25819237-25819062) | |
| 498-666, gnl|dasNov1|scaffold_18217 (46215-46404) | |
| 498-666, gnl|echTel1|scaffold_129609 (638-449) | |
| 498-666, gnl|fr1|chrUn (156984330-156984516) | |
| 498-666, gnl|galGal2|chrUn (53518288-53518477) | |
| 498-666, gnl|hg17|chr5 (150685038-150685227) | |
| 498-666, gnl|Hg17|chr5 (150685207-150685039) | |
| 498-666, gnl|loxAfr1|scaffold_223249 (421-232) | |
| 498-666, gnl|mm7|chr11 (55120988-55121177) | |
| 498-666, gnl|Mm7|chr11 (55121157-55120989) | |
| 498-666, gnl|monDom2|scaffold_6 (55091335-55091161) | |
| 498-666, gnl|oryCun1|scaffold_115567 (211-22) | |
| 498-666, gnl|panTro1|chr4 (157637765-157637954) | |
| 498-666, gnl|rheMac2|chr6 (147745772-147745961) | |
| 498-666, gnl|rn3|chr10 (40583212-40583401) | |
| 498-666, gnl|tetNig1|chr1_random (4234477-4234647) | |
| 498-666, gnl|xenTro1|scaffold_10 (3111236-3111042) | |
| 828-1126, gnl|bosTau2|chr7 (43247838-43247543) | |
| 828-1126, gnl|Hg17|chr5 (150676850-150676554) | |
| 828-1126, gnl|Mm7|chr11 (55116379-55116090) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.132784) |