Non-Coding RNA Search

Ss1.1-Pig4-TMW8017G03.3

Sequence:


               
               CAGAGGAATCATGACGGGGAAGAAGTCTTCCCGGGAAAAGCGGCGCAAACGAAGCGGTCA
GGAGGCTGCGGCGGCGCTTGCGGCGCCAGAACTTGTCCCCGCCGTCGCCGGCAGCGGCAG
TGGAAGCACCAGCGGCTGCGGTAGCGCAAGCGGCTGCGGGAGCGTCACCTGCTGTGGGAA
CACCAGCTTCAGTGGAAGTGTCACCGGCACTGGGAGCGGTGGTAGCTGCTGGGGTGGCAG
CGGCGTGGAGCGCAGCGAGCGTCGGAAGCGGAGGAGCACTGACTCATCTTCCAGTGTTTC
GGGCTCCCTGCAGCAGGAAGCCAAATATCTTTTGCCAACTCTTGATAAAGAGTTATTCCT
GGCAGAGCACAGTGACCTTGAAGAAGGTGGATTGGACCTGACTGTGGCATTAAAACCAGT
TAGTTTCTATATCTCAGACAAAAAGGAAATGCTTCAGCAGTGTTTCTGTATCATAGGAGA
GAAGAAGTTACAGAAGATGCTTCCTGATGTGTTAAAGAACTGTTCAATAGAAGAAATTAA
AAAACTCTGCCAGGAACAGTTAGAGCTCCTGTCTGAAAAAAAAATCTTGAAGATTCTTGA
GGGTGACAATGCTGTGGACTCTGATATGGAAGAAGAGGCAGACGATGGTTCTAAGATGGG
ATCTGAGTTAGTTAGTCAACAAGACATCTGTACAGATTCTACTTCATCCCTGAAAGAGAA
CAAGCAACCTGAAGGTTTGGAATTAAAACAAGGCAAAGGGGAAGATAGTGATGTACTCAG
TATAAATGCAGATGCTTACGACAGCGACATAGAAGGTCCATGCAATGAAGAAGCAGCTGC
TCCTGAGGTCCCAGAAAATACAGTCCAAAGTGAAGCTGGTCAGATAGATGACCTGGAGAA
AGACATTGAGAAAAGTGTGAATGAAATTCTGGGACTGGCAGAATCTAGCCCAAAAGAACC
CAAAGCAGCCACCCTGACTGTTCCTCCACCTGAAGATGTTCAGCCTTCTGCACAGCAGCT
GGAGCTGCTAGAACTTGAGATGAGGGCAAGAGCTATTAAAGCCCTCATGAAAGCTGGTGA
TATAAAAAAGCCAGCCTAGTTATTTAAATTGAGTGAATATTAGATGTGTTTGAACAAAGC
CATGTCATATAATTTTGTATCTAAAGTTTATTTTGGGGTCTTACATGATATTTCTCTGTA
ACTCTTATTAAATAAATTTGCCTTATGTCTAAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGGAATCATGACGGGGAAGAAGTCTTCCCGGGAAAAGCGGCGCAAACGAAGCGGTCA
GGAGGCTGCGGCGGCGCTTGCGGCGCCAGAACTTGTCCCCGCCGTCGCCGGCAGCGGCAG
TGGAAGCACCAGCGGCTGCGGTAGCGCAAGCGGCTGCGGGAGCGTCACCTGCTGTGGGAA
CACCAGCTTCAGTGGAAGTGTCACCGGCACTGGGAGCGGTGGTAGCTGCTGGGGTGGCAG
CGGCGTGGAGCGCAGCGAGCGTCGGAAGCGGAGGAGCACTGACTCATCTTCCAGTGTTTC
GGGCTCCCTGCAGCAGGAAGCCAAATATCTTTTGCCAACTCTTGATAAAGAGTTATTCCT
GGCAGAGCACAGTGACCTTGAAGAAGGTGGATTGGACCTGACTGTGGCATTAAAACCAGT
TAGTTTCTATATCTCAGACAAAAAGGAAATGCTTCAGCAGTGTTTCTGTATCATAGGAGA
GAAGAAGTTACAGAAGATGCTTCCTGATGTGTTAAAGAACTGTTCAATAGAAGAAATTAA
AAAACTCTGCCAGGAACAGTTAGAGCTCCTGTCTGAAAAAAAAATCTTGAAGATTCTTGA
GGGTGACAATGCTGTGGACTCTGATATGGAAGAAGAGGCAGACGATGGTTCTAAGATGGG
ATCTGAGTTAGTTAGTCAACAAGACATCTGTACAGATTCTACTTCATCCCTGAAAGAGAA
CAAGCAACCTGAAGGTTTGGAATTAAAACAAGGCAAAGGGGAAGATAGTGATGTACTCAG
TATAAATGCAGATGCTTACGACAGCGACATAGAAGGTCCATGCAATGAAGAAGCAGCTGC
TCCTGAGGTCCCAGAAAATACAGTCCAAAGTGAAGCTGGTCAGATAGATGACCTGGAGAA
AGACATTGAGAAAAGTGTGAATGAAATTCTGGGACTGGCAGAATCTAGCCCAAAAGAACC
CAAAGCAGCCACCCTGACTGTTCCTCCACCTGAAGATGTTCAGCCTTCTGCACAGCAGCT
GGAGCTGCTAGAACTTGAGATGAGGGCAAGAGCTATTAAAGCCCTCATGAAAGCTGGTGA
TATAAAAAAGCCAGCCTAGTTATTTAAATTGAGTGAATATTAGATGTGTTTGAACAAAGC
CATGTCATATAATTTTGTATCTAAAGTTTATTTTGGGGTCTTACATGATATTTCTCTGTA
ACTCTTATTAAATAAATTTGCCTTATGTCTAAAATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61826857|ref|XP_586605.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61826857|ref|XP_586605.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               121-240, + strand, RNAz p=0.866089
               

               
               840-944, - strand, RNAz p=0.977191
               

               
               985-1103, - strand, RNAz p=0.924541

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, + strand, RNAz p=0.866089
               

               
               840-944, - strand, RNAz p=0.977191
               

               
               985-1103, - strand, RNAz p=0.924541

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-317, gnl|bosTau2|chr8 (10701758-10702073)
               

               
               2-317, gnl|Hg17|chr9 (26882722-26882410)
               


               
               751-1236, gnl|bosTau2|chr8 (10771711-10772200)
               

               
               751-1236, gnl|Hg17|chr9 (26832647-26832163)
               

               
               751-1236, gnl|Mm7|chr4 (93894024-93893499)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-317, gnl|bosTau2|chr8 (10701758-10702073)
               

               
               2-317, gnl|Hg17|chr9 (26882722-26882410)
               


               
               751-1236, gnl|bosTau2|chr8 (10771711-10772200)
               

               
               751-1236, gnl|Hg17|chr9 (26832647-26832163)
               

               
               751-1236, gnl|Mm7|chr4 (93894024-93893499)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.191681)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               spl (0.143184)

	121-240, + strand, RNAz p=0.866089
	840-944, - strand, RNAz p=0.977191
	985-1103, - strand, RNAz p=0.924541

	2-317, gnl\|bosTau2\|chr8 (10701758-10702073)
	2-317, gnl\|Hg17\|chr9 (26882722-26882410)

	751-1236, gnl\|bosTau2\|chr8 (10771711-10772200)
	751-1236, gnl\|Hg17\|chr9 (26832647-26832163)
	751-1236, gnl\|Mm7\|chr4 (93894024-93893499)