Non-Coding RNA Search

Ss1.1-Pig4-TMW8017G13.5

Sequence:


               
               GGCGCGAGTGGGAATACTCCCACCGCCATGGCTTCCGCTGCCAGTTTGCCAATGGCATCT
TCCAGCTCTGGTTCCACTTCAAGCGCTACCGCTACCGGCGGTGATGGCCAGGCCTCGTCC
CGGAGCCCTGCGACCTCCCCGGCGGGCCTGCAAAGCTGGCAGCCTCCTCCCCTCTGGCAG
AGTGTGAACAGGGGTCACGGCAGAGCCTCCCTCGAAAAGTTCAGGGGACACATGGACAGG
CTGGCCTGGGGCGCTGAAGCACGGGAGGAGCTGCTGATGGAATTTTCAGAGCCAGGGAAC
TCAACACGAGTCACACGACCAAGCCCCACATCACCTGCCCTAAGCCAGGGCTGCTGGGAG
CTTGCCAGGTGTTGATCAGCCCCTCTACATGGCCGGCAGTTGCAGGACCGGCGGGATCCA
GGTTCCAGGCCATCCAGGGCCACCATCAGCTCTGCTGTCCCCCCAGCTCGCCCATGGTGC
TGGCTGTGGGTCAGTCTCCTCCCGATGGGCATGGAGGACATGACATCACCCACCATCAGG
TCTGGGAACATCCTTCCATGGCCGTAGAGCGCAAGAGTTCCCATGACCTAGCCCTTGGGT
GTGGCTGCAGTGCCTCCTCTGGCCTGGTCCTTTGGGCATCCCTCAAGGCAGCTTCCTTCC
CAGCTGCCAGAGCTGCCCTCCTCATCCCTTGTCCCAGACAGGGACAGACGAGGGCCTGAC
AGGTACGATCACTCACCCAGTCACAGACTGAAATCATCCACCAGGCCAGCCAACCCTAGA
AACAGATATTTTTTTTTCCTGCATCCACGGCATGCAGAAGTCCCCAGGCCAGGGATCGAA
CCCACGCCATGGCAGTGACCCCAGCCGCTATAGTGACAACACTGGCTACCCGCTGTGCTA
CCAGCGAACTCCCAGGGACAGATTTCTTTTTAACTTTTTCTTATGGAGATATTTCCAACC
TTAAGTGGGAAGAAGCCTCAAGGGCCGCTTTCCAGCTCCTCAGACAGCGCTGCCCAAACA
CCCTGTTTCACCTGGAAACATTTCAGGTTATTTCTCTAAAAAGACTTTTTTAGGTGGGGG
GGAGGGGAAATCTTGTTTATTTTCATTTAATTGATCTACTTGTGAGATTGCATGTTTTTT
TAATAAACATTTTATTTTAGACTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCGAGTGGGAATACTCCCACCGCCATGGCTTCCGCTGCCAGTTTGCCAATGGCATCT
TCCAGCTCTGGTTCCACTTCAAGCGCTACCGCTACCGGCGGTGATGGCCAGGCCTCGTCC
CGGAGCCCTGCGACCTCCCCGGCGGGCCTGCAAAGCTGGCAGCCTCCTCCCCTCTGGCAG
AGTGTGAACAGGGGTCACGGCAGAGCCTCCCTCGAAAAGTTCAGGGGACACATGGACAGG
CTGGCCTGGGGCGCTGAAGCACGGGAGGAGCTGCTGATGGAATTTTCAGAGCCAGGGAAC
TCAACACGAGTCACACGACCAAGCCCCACATCACCTGCCCTAAGCCAGGGCTGCTGGGAG
CTTGCCAGGTGTTGATCAGCCCCTCTACATGGCCGGCAGTTGCAGGACCGGCGGGATCCA
GGTTCCAGGCCATCCAGGGCCACCATCAGCTCTGCTGTCCCCCCAGCTCGCCCATGGTGC
TGGCTGTGGGTCAGTCTCCTCCCGATGGGCATGGAGGACATGACATCACCCACCATCAGG
TCTGGGAACATCCTTCCATGGCCGTAGAGCGCAAGAGTTCCCATGACCTAGCCCTTGGGT
GTGGCTGCAGTGCCTCCTCTGGCCTGGTCCTTTGGGCATCCCTCAAGGCAGCTTCCTTCC
CAGCTGCCAGAGCTGCCCTCCTCATCCCTTGTCCCAGACAGGGACAGACGAGGGCCTGAC
AGGTACGATCACTCACCCAGTCACAGACTGAAATCATCCACCAGGCCAGCCAACCCTAGA
AACAGATATTTTTTTTTCCTGCATCCACGGCATGCAGAAGTCCCCAGGCCAGGGATCGAA
CCCACGCCATGGCAGTGACCCCAGCCGCTATAGTGACAACACTGGCTACCCGCTGTGCTA
CCAGCGAACTCCCAGGGACAGATTTCTTTTTAACTTTTTCTTATGGAGATATTTCCAACC
TTAAGTGGGAAGAAGCCTCAAGGGCCGCTTTCCAGCTCCTCAGACAGCGCTGCCCAAACA
CCCTGTTTCACCTGGAAACATTTCAGGTTATTTCTCTAAAAAGACTTTTTTAGGTGGGGG
GGAGGGGAAATCTTGTTTATTTTCATTTAATTGATCTACTTGTGAGATTGCATGTTTTTT
TAATAAACATTTTATTTTAGACTAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-167, gnl|bosTau2|chr7 (17037178-17037014)
               

               
               3-167, gnl|Hg17|chr19 (3563022-3562849)
               


               
               911-1165, gnl|bosTau2|chr7 (17036350-17036081)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-167, gnl|bosTau2|chr7 (17037178-17037014)
               

               
               3-167, gnl|Hg17|chr19 (3563022-3562849)
               


               
               911-1165, gnl|bosTau2|chr7 (17036350-17036081)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               eje (0.0988338)

	3-167, gnl\|bosTau2\|chr7 (17037178-17037014)
	3-167, gnl\|Hg17\|chr19 (3563022-3562849)

	911-1165, gnl\|bosTau2\|chr7 (17036350-17036081)

	nep (0.183925)
	sag (0.182715)
	fty (0.17584)
	fco (0.157208)
	che (0.136314)
	ste (0.135208)
	ese (0.126502)
	eje (0.0988338)