Non-Coding RNA Search

Ss1.1-Pig4-TMW8017H05.5

Sequence:


               
               GCGGAGCAGGACTACGCCGCTCGGGGCCCGCGCGCCCGGGGAGGCCCGCGACTACTCCCC
GTCCCGCAACCCCCAGGAGGTGGAGGCGCGGTAGTCCCCGCGGGGCCGCGCCCGCCGCAT
GTACAGAGGCCCCTCCACGAAAGCACTGCTGTCAACTTTTTTAACTGTACGTTGTTTCTA
GAACCTAAGCACAGTTCCATCGGTCCTGGGGTGACGCCCGCTCCTCCACCTGCAGCCTGC
GGAGCCAGGGATTTCAGACACGGTTTTGCCAGGAGTGATCTTTTGCTTTCCAAGCTCGAC
ATTAGGCAATTGGAGAAAAACTTCAAGTTTGTACCTTTTTTCCCACAGGTGATAAGCGTT
TTTAACAGATTTGTATTTTTTTCAATTTTGTGCTCTTTAGACGTTTAAAAGAAAAAGACT
TTTGCTTTTTTATTTTTAGTTTGGATTTGCAATTTAATGGCCTCAGATCCCTCTCCAGAG
CCCCAGGGGTTTTTTTTGTCTTATTTATGAAGAAAAAACAAAAAACAAAAAAACGGTCAT
TTTGTCCAACGCACTGTGAGGCCCCCACTCAGGCCCGGCCCTGGCCCTCCCTTGGTACTT
GGAACAGAAGTTACAGATATATATTAAGATAATTAATAATGTACAAAACTTTTTTTGCCT
TATTATGCAGAAGTGTAAAAGGGTTTCCTTTTTGGTTTGTTTTTTTTAAAAAAACAAATG
AAACCGTGTACATAGTCTGTTAATATAAATATATGATGTTATTAAATTCTTAACCTAGGT
AGACTTTATAAAAATCGTTTCTAGAAATTCCTCTGGTTATTTGTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGAGCAGGACTACGCCGCTCGGGGCCCGCGCGCCCGGGGAGGCCCGCGACTACTCCCC
GTCCCGCAACCCCCAGGAGGTGGAGGCGCGGTAGTCCCCGCGGGGCCGCGCCCGCCGCAT
GTACAGAGGCCCCTCCACGAAAGCACTGCTGTCAACTTTTTTAACTGTACGTTGTTTCTA
GAACCTAAGCACAGTTCCATCGGTCCTGGGGTGACGCCCGCTCCTCCACCTGCAGCCTGC
GGAGCCAGGGATTTCAGACACGGTTTTGCCAGGAGTGATCTTTTGCTTTCCAAGCTCGAC
ATTAGGCAATTGGAGAAAAACTTCAAGTTTGTACCTTTTTTCCCACAGGTGATAAGCGTT
TTTAACAGATTTGTATTTTTTTCAATTTTGTGCTCTTTAGACGTTTAAAAGAAAAAGACT
TTTGCTTTTTTATTTTTAGTTTGGATTTGCAATTTAATGGCCTCAGATCCCTCTCCAGAG
CCCCAGGGGTTTTTTTTGTCTTATTTATGAAGAAAAAACAAAAAACAAAAAAACGGTCAT
TTTGTCCAACGCACTGTGAGGCCCCCACTCAGGCCCGGCCCTGGCCCTCCCTTGGTACTT
GGAACAGAAGTTACAGATATATATTAAGATAATTAATAATGTACAAAACTTTTTTTGCCT
TATTATGCAGAAGTGTAAAAGGGTTTCCTTTTTGGTTTGTTTTTTTTAAAAAAACAAATG
AAACCGTGTACATAGTCTGTTAATATAAATATATGATGTTATTAAATTCTTAACCTAGGT
AGACTTTATAAAAATCGTTTCTAGAAATTCCTCTGGTTATTTGTTTAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-828, gnl|bosTau2|chr17 (23009490-23010300)
               

               
               1-828, gnl|Hg17|chr12 (131770621-131771407)
               

               
               1-828, gnl|Mm7|chr5 (109529640-109528922)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-828, gnl|bosTau2|chr17 (23009490-23010300)
               

               
               1-828, gnl|Hg17|chr12 (131770621-131771407)
               

               
               1-828, gnl|Mm7|chr5 (109529640-109528922)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               cte (0.29274)
               

               
               lnt (0.284616)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               lnt (0.284616)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

	1-828, gnl\|bosTau2\|chr17 (23009490-23010300)
	1-828, gnl\|Hg17\|chr12 (131770621-131771407)
	1-828, gnl\|Mm7\|chr5 (109529640-109528922)

	cte (0.29274)
	lnt (0.284616)
	cmu (0.186393)
	fty (0.17584)
	eye (0.170503)
	lun (0.150489)
	ese (0.126502)
	cty (0.10408)