Non-Coding RNA Search

Ss1.1-Pig4-TMW8017H06.3

Sequence:


               
               CTGGGGAACTCCTCACATAACCTTTTTTTATTAGCATCCTGCCTCAGGGGCTTTACACAG
GCTGTTCCCTCTGCCTAGAATATTCTCCCCCCATAGGTCACAGGACTAGCTCCTCATTGC
TCAGGTCTTTGTTCAAACGTCATCTGCTCTGAGAGGCCTTCCCTGACCTCCTTATCTAAG
ATAATTCCTACCCCCTCCACCATTTTATTTCCCATGGAGTATAAGCTCCATGAGGGCACA
GTTTTTGTTTCCTGTCACCAGTGCCTGGCACATCCTGGGACCTCATTAGGAACAGGGTGA
GTCCATGAGTCCTGAAAGGAGTCAGGGACCCCAGCCTATCTGGTGTGGCCCCCTGGCCAG
TGCAGCTTCTGTAGCAGGAGTGGGTTCTTTTTTATATTCCCTAGAGAATCTATTTTTTAA
CCCCTTATTTCTACACCACCTTTCTTGGCCCAATGTTTTTAGGGTACTTTACTTTTCATC
AAACCAGGGATTCCTGTGCCCTTCTCTGTCCAGCCCAAGTGCCTGGCCTGGTCCCATGGC
AGCTGTTTCCCAGCCTTCTTACTCAGGGAATTGTCACACCAGGAACTGCTGCAGGGCACA
GCCCCTTTCAGACCAGAGAGCTCAGTGTCCTTCCTTGGCCCTCAGAAGGTGGCCGCATGG
TATCTTAACAGTGATCCCTCGGTGTGGTGACAATGGCCTCGTCTTCTCCTCTGGACGAAT
AAGGTGGGGGGTGCTCTTTGTATGAGGGGAAGGCAGGCTGGGGCCTGTCTGAGCTCAAGA
ATAAACCAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGGAACTCCTCACATAACCTTTTTTTATTAGCATCCTGCCTCAGGGGCTTTACACAG
GCTGTTCCCTCTGCCTAGAATATTCTCCCCCCATAGGTCACAGGACTAGCTCCTCATTGC
TCAGGTCTTTGTTCAAACGTCATCTGCTCTGAGAGGCCTTCCCTGACCTCCTTATCTAAG
ATAATTCCTACCCCCTCCACCATTTTATTTCCCATGGAGTATAAGCTCCATGAGGGCACA
GTTTTTGTTTCCTGTCACCAGTGCCTGGCACATCCTGGGACCTCATTAGGAACAGGGTGA
GTCCATGAGTCCTGAAAGGAGTCAGGGACCCCAGCCTATCTGGTGTGGCCCCCTGGCCAG
TGCAGCTTCTGTAGCAGGAGTGGGTTCTTTTTTATATTCCCTAGAGAATCTATTTTTTAA
CCCCTTATTTCTACACCACCTTTCTTGGCCCAATGTTTTTAGGGTACTTTACTTTTCATC
AAACCAGGGATTCCTGTGCCCTTCTCTGTCCAGCCCAAGTGCCTGGCCTGGTCCCATGGC
AGCTGTTTCCCAGCCTTCTTACTCAGGGAATTGTCACACCAGGAACTGCTGCAGGGCACA
GCCCCTTTCAGACCAGAGAGCTCAGTGTCCTTCCTTGGCCCTCAGAAGGTGGCCGCATGG
TATCTTAACAGTGATCCCTCGGTGTGGTGACAATGGCCTCGTCTTCTCCTCTGGACGAAT
AAGGTGGGGGGTGCTCTTTGTATGAGGGGAAGGCAGGCTGGGGCCTGTCTGAGCTCAAGA
ATAAACCAAATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               13-112, - strand, RNAz p=0.901927

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               13-112, - strand, RNAz p=0.901927

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               13-201, gnl|bosTau2|chr7 (13199693-13199505)
               

               
               13-201, gnl|hg17|chr19 (5860658-5860793)
               

               
               13-201, gnl|panTro1|chr20 (6207150-6207285)
               

               
               13-201, gnl|rheMac2|chr19 (5812722-5812858)
               


               
               325-791, gnl|bosTau2|chr7 (13199427-13198969)
               

               
               325-791, gnl|Hg17|chr19 (5860802-5861242)
               

               
               325-791, gnl|Mm7|chr17 (54924162-54923773)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-201, gnl|bosTau2|chr7 (13199693-13199505)
               

               
               13-201, gnl|hg17|chr19 (5860658-5860793)
               

               
               13-201, gnl|panTro1|chr20 (6207150-6207285)
               

               
               13-201, gnl|rheMac2|chr19 (5812722-5812858)
               


               
               325-791, gnl|bosTau2|chr7 (13199427-13198969)
               

               
               325-791, gnl|Hg17|chr19 (5860802-5861242)
               

               
               325-791, gnl|Mm7|chr17 (54924162-54923773)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.142837)
               

               
               che (0.136314)
               

               
               cov (0.132153)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               cov (0.132153)

	13-201, gnl\|bosTau2\|chr7 (13199693-13199505)
	13-201, gnl\|hg17\|chr19 (5860658-5860793)
	13-201, gnl\|panTro1\|chr20 (6207150-6207285)
	13-201, gnl\|rheMac2\|chr19 (5812722-5812858)

	325-791, gnl\|bosTau2\|chr7 (13199427-13198969)
	325-791, gnl\|Hg17\|chr19 (5860802-5861242)
	325-791, gnl\|Mm7\|chr17 (54924162-54923773)