Ss1.1-Pig4-TMW8017I06.5
|
GAGACTGAGACGCCAGCAGCTCTCTTGCGTCCCTGGGCCCTGGGCGATGGAGAACGGAGC
GGTCTACAGCCCCACCACAGAGGCGCACCCAGCCCCCTCCAGAGGCGCCCGGAGAGGCCT
CTCCAGCTACTTCACCTTAAAGCGGCTCAAGGGGCCCTTGCGAATCCTCAAATTTATGCA
GCTGGTGCTCTCTCTGTTGGCCTTTATCTGTGAGGAAATCGTATCACAATGTACTCTGTG
TGGAGGACTTTACTTTTTTGAATTTGTAAGTTGCAGTGCCTTTCTCCTGAGTCTCCTTAT
CCTGATTGTGTACTGCACTCCAGTGTATGACAAAGTTGACCCCGAAAAAGTCAAGCCATC
GGATTTTTATATTACTGCGGGAATAGGATTCGTGTTTCTCGTGGCATCTGTCATTTTTGC
TTTCACACATGACAATACCTATGCGGAACTTTTTGCAATTGTGTTTGGATTTCTAGCAAG
TTTGAGCTTTCTGTTTAACTTCTTCCTTATGGCCTATGAAAAATTTAAACAGCTCCGGCC
AAGAAAACCTGAGGATACCACCAGGACAGAGCCCCTCACTGAACCACTTAATGCCTAGAG
ACTCTAGGGAACAGGTGTTCCAGAAGGTAGCAGCTGCCAAGTGCCTGAGCAGGAGTGCTT
GGAGAATGTGTGTCGTGGAGAACAAGGCAGGAAGGCAGTGTGGTCAATAATGATTGGACT
GTGTGTCAGTCACCATACCCTGGGCCAGAGGGCTTTTTGTTTTTTCAAAAAAATTTTTTT
ATAACAATTGAAAGTAGTGTCAAATGAAGTTTTGTTTGGAGGTGAGGGCAATTGTTTCTT
TATCATCAGCTGAGCTATGTGATTTATTCTGTCATTTTTACTAGGCTAGTAAGGCTTAAC
TTTAAGTTATACTTTATAGCTGTATAGACAGTAGCATGATTAAGTCTGTCTATTTAGAAA
TGGTTCCATTTTTTAAGTCAATTTGCTTTGCTTTTACTGTTTTTTGATGTCTAGATAACA
TTTAATCTATGTGTTTCAAAGATCCGTATTTTAAATGTTGGTCTAAGTTTTTCCCTTCAA
ATGTAAAACCCAGGCTTTACTGTATCTCACTCAGCCTTAAAATTATACTGTAACATTTTA
CTGTATCTCACTTAGCCTTAAAATTACACTGTAATTATTATTCTTTCTGAGACCTGTTAT
AAATGTATGGGAGATGTTGATATTCTGTGTTACAAAAACAACAACATCAGCAACCCCGTG
TTTATATTGCATTTTGGTTGTTGATATCAAGTTAAAAAATCTTTATATACCATTACACAT
AGAAAAATGGAAGAAATTGCTGTCATGACTAAGGACCAAAGATAAGAAAGATCTACTTTT
TGCCCAATATAGTGAAGGTAGTTTGAAAAGCAGTCTTTAGCCACTTACCAAGTGTCTGAA
GAGATGGCATTCATACCACAAGCTAGAAAATGGTTCGTTCCCTTTTGCCATATAATTATT
TCTACTGAAAGTAATACAGCTCTGCAGGTTCTGTTCAGTGTTTTCTTTGGAACCAGTTTA
ATTTTTAAAACCCCAACCTTTGATTTTTCATTTGAGAGCCTCCCTCTCTGTCTCCGTATC
AAAACGGTCCATGACCTGCCTCTCACTGGCAGAGATGGGCCTCTGGCCCTGGCTCCCTTG
ATGGCAGTGGGCTTGAGGTGTTCTAACAGTCTTGGGCCTTTCTAACTGCATAGAGTCTGT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAGACTGAGACGCCAGCAGCTCTCTTGCGTCCCTGGGCCCTGGGCGATGGAGAACGGAGC
GGTCTACAGCCCCACCACAGAGGCGCACCCAGCCCCCTCCAGAGGCGCCCGGAGAGGCCT
CTCCAGCTACTTCACCTTAAAGCGGCTCAAGGGGCCCTTGCGAATCCTCAAATTTATGCA
GCTGGTGCTCTCTCTGTTGGCCTTTATCTGTGAGGAAATCGTATCACAATGTACTCTGTG
TGGAGGACTTTACTTTTTTGAATTTGTAAGTTGCAGTGCCTTTCTCCTGAGTCTCCTTAT
CCTGATTGTGTACTGCACTCCAGTGTATGACAAAGTTGACCCCGAAAAAGTCAAGCCATC
GGATTTTTATATTACTGCGGGAATAGGATTCGTGTTTCTCGTGGCATCTGTCATTTTTGC
TTTCACACATGACAATACCTATGCGGAACTTTTTGCAATTGTGTTTGGATTTCTAGCAAG
TTTGAGCTTTCTGTTTAACTTCTTCCTTATGGCCTATGAAAAATTTAAACAGCTCCGGCC
AAGAAAACCTGAGGATACCACCAGGACAGAGCCCCTCACTGAACCACTTAATGCCTAGAG
ACTCTAGGGAACAGGTGTTCCAGAAGGTAGCAGCTGCCAAGTGCCTGAGCAGGAGTGCTT
GGAGAATGTGTGTCGTGGAGAACAAGGCAGGAAGGCAGTGTGGTCAATAATGATTGGACT
GTGTGTCAGTCACCATACCCTGGGCCAGAGGGCTTTTTGTTTTTTCAAAAAAATTTTTTT
ATAACAATTGAAAGTAGTGTCAAATGAAGTTTTGTTTGGAGGTGAGGGCAATTGTTTCTT
TATCATCAGCTGAGCTATGTGATTTATTCTGTCATTTTTACTAGGCTAGTAAGGCTTAAC
TTTAAGTTATACTTTATAGCTGTATAGACAGTAGCATGATTAAGTCTGTCTATTTAGAAA
TGGTTCCATTTTTTAAGTCAATTTGCTTTGCTTTTACTGTTTTTTGATGTCTAGATAACA
TTTAATCTATGTGTTTCAAAGATCCGTATTTTAAATGTTGGTCTAAGTTTTTCCCTTCAA
ATGTAAAACCCAGGCTTTACTGTATCTCACTCAGCCTTAAAATTATACTGTAACATTTTA
CTGTATCTCACTTAGCCTTAAAATTACACTGTAATTATTATTCTTTCTGAGACCTGTTAT
AAATGTATGGGAGATGTTGATATTCTGTGTTACAAAAACAACAACATCAGCAACCCCGTG
TTTATATTGCATTTTGGTTGTTGATATCAAGTTAAAAAATCTTTATATACCATTACACAT
AGAAAAATGGAAGAAATTGCTGTCATGACTAAGGACCAAAGATAAGAAAGATCTACTTTT
TGCCCAATATAGTGAAGGTAGTTTGAAAAGCAGTCTTTAGCCACTTACCAAGTGTCTGAA
GAGATGGCATTCATACCACAAGCTAGAAAATGGTTCGTTCCCTTTTGCCATATAATTATT
TCTACTGAAAGTAATACAGCTCTGCAGGTTCTGTTCAGTGTTTTCTTTGGAACCAGTTTA
ATTTTTAAAACCCCAACCTTTGATTTTTCATTTGAGAGCCTCCCTCTCTGTCTCCGTATC
AAAACGGTCCATGACCTGCCTCTCACTGGCAGAGATGGGCCTCTGGCCCTGGCTCCCTTG
ATGGCAGTGGGCTTGAGGTGTTCTAACAGTCTTGGGCCTTTCTAACTGCATAGAGTCTGT |
|
gi|61818099|ref|XP_585726.1| |
Protein identifier
|
gi|61818099|ref|XP_585726.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
184-362, gnl|bosTau2|chr22 (10967467-10967289) |
|
184-362, gnl|canFam2|chr23 (15346905-15346634) |
|
184-362, gnl|dasNov1|scaffold_21344 (7108-6842) |
|
184-362, gnl|echTel1|scaffold_314100 (44970-44700) |
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184-362, gnl|hg17|chr3 (32508149-32508415) |
|
184-362, gnl|Hg17|chr3 (32508383-32508205) |
|
184-362, gnl|loxAfr1|scaffold_12714 (19011-19272) |
|
184-362, gnl|mm7|chr9 (114388499-114388251) |
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184-362, gnl|Mm7|chr9 (114388278-114388456) |
|
184-362, gnl|oryCun1|scaffold_85946 (4432-4187) |
|
184-362, gnl|panTro1|chr2 (33503806-33504072) |
|
184-362, gnl|rheMac2|chr2 (174962508-174962778) |
|
184-362, gnl|rn3|chr8 (119175004-119174756) |
| |
|
461-1261, gnl|bosTau2|chr22 (10957656-10956892) |
|
461-1261, gnl|Hg17|chr3 (32500593-32499775) |
|
461-1261, gnl|Mm7|chr9 (114397535-114398286) |
| |
|
1410-1687, gnl|bosTau2|chr22 (10956825-10956561) |
|
1410-1687, gnl|Hg17|chr3 (32499653-32499342) |
|
1410-1687, gnl|Mm7|chr9 (114398403-114398686) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
184-362, gnl|bosTau2|chr22 (10967467-10967289) |
|
184-362, gnl|canFam2|chr23 (15346905-15346634) |
|
184-362, gnl|dasNov1|scaffold_21344 (7108-6842) |
|
184-362, gnl|echTel1|scaffold_314100 (44970-44700) |
|
184-362, gnl|hg17|chr3 (32508149-32508415) |
|
184-362, gnl|Hg17|chr3 (32508383-32508205) |
|
184-362, gnl|loxAfr1|scaffold_12714 (19011-19272) |
|
184-362, gnl|mm7|chr9 (114388499-114388251) |
|
184-362, gnl|Mm7|chr9 (114388278-114388456) |
|
184-362, gnl|oryCun1|scaffold_85946 (4432-4187) |
|
184-362, gnl|panTro1|chr2 (33503806-33504072) |
|
184-362, gnl|rheMac2|chr2 (174962508-174962778) |
|
184-362, gnl|rn3|chr8 (119175004-119174756) |
| |
|
461-1261, gnl|bosTau2|chr22 (10957656-10956892) |
|
461-1261, gnl|Hg17|chr3 (32500593-32499775) |
|
461-1261, gnl|Mm7|chr9 (114397535-114398286) |
| |
|
1410-1687, gnl|bosTau2|chr22 (10956825-10956561) |
|
1410-1687, gnl|Hg17|chr3 (32499653-32499342) |
|
1410-1687, gnl|Mm7|chr9 (114398403-114398686) |
|
cbl (0.344392) |
|
lin (0.291206) |
|
ste (0.270416) |
|
mgm (0.180343) |
|
nje (0.16592) |
|
csp (0.161186) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
lyg (0.133103) |
|
sug (0.127291) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
cbl (0.344392) |
|
lin (0.291206) |
|
ste (0.270416) |
|
mgm (0.180343) |
|
nje (0.16592) |
|
csp (0.161186) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
lyg (0.133103) |
|
sug (0.127291) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
cty (0.10408) |
