Ss1.1-Pig4-TMW8017J19.5
|
GGCTGTGGAAGATGGAGCTACAGAAATCGATGTGGTGATTAACAGGACCTTGGTGCTAAC
AGGCCAGTGGGAGGCCCTGTATGATGAGATTCGTCAGTTTCGCAAGGCCTGTGGGGAGGC
TCATCTCAAAACCATCTTAGCAACAGGAGAACTTGGATCCCTTACTAATGTCTATAAAGC
CAGTATGATAGCGATGATGGCAGGGTCAGATTTTATTAAGACCTCTACTGGGAAAGAAAC
AGTAAATGCCACCTTCCCTGTAGCAATAGTAATGCTACGAGCCATTAGAGATTTCTTCTG
GAAAACTGGAAACAAGATAGGCTTTAAGCCAGCAGGAGGCATCCGAAGTGCAAAGGACTC
CCTGGCTTGGCTCTCTCTCATAAAGGAAGAGCTAGGAGATGAGTGGCTGAAGCCAGAACT
CTTTCGAATAGGTGCCAGCACCCTCCTAGCAGACATCGAGAGGCAGATTTACCATCATGT
GACTGGAAGATATGCAGCTTATCATGATCTTCCGATGTCTTAGAACAGCAATAAGTCCTT
CCCAACAATGTTTAAAAATTCTTTTTCTACGTGATCCCTAAAATCATTTAATAAAAAATG
GGGGACTAGGTAACTGACCTTTTCCCTTAAAATTTCCATAGAATTTAACTCAAAGAATGA
AAGGGACAAACCAAATTATCTACACATGGTCCCCACTTCAGGCACATCTGAAAGGTCTTA
ATTACCAGAAGAGCTGCAATGTTAATTTTGTGACAGTTTTCACTTAAGAACTCTGGGTAA
AATGTTCATGGTAGCTTTGACAACATTAAGTTCTAAGGAAGTGGAATGTTGACTTGCCTA
AGAACCATGCTGCAGCATAAGAAAACAGGGTGCCCTGTACTACCAACTTTGGGAGTCAAT
CACTCAGCACTGAATTCCTGCCGGGAAGATCCATCTTTAATTTTTGCAGCACATATGCTC
TTTTACTAATTGTTTTGCTAATGAAATTTCTGTCATTGTTCTATGAAACTATGGGTATAT
CATTGAATTTTTTTTAATTAAAAAAATTCCTTTTTTTTATTATTAAAAAACCCTTTAAAT
TGTAATAATACATATTAAAAGGTTAATCCATTAAACATACAAAGAGGTAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCTGTGGAAGATGGAGCTACAGAAATCGATGTGGTGATTAACAGGACCTTGGTGCTAAC
AGGCCAGTGGGAGGCCCTGTATGATGAGATTCGTCAGTTTCGCAAGGCCTGTGGGGAGGC
TCATCTCAAAACCATCTTAGCAACAGGAGAACTTGGATCCCTTACTAATGTCTATAAAGC
CAGTATGATAGCGATGATGGCAGGGTCAGATTTTATTAAGACCTCTACTGGGAAAGAAAC
AGTAAATGCCACCTTCCCTGTAGCAATAGTAATGCTACGAGCCATTAGAGATTTCTTCTG
GAAAACTGGAAACAAGATAGGCTTTAAGCCAGCAGGAGGCATCCGAAGTGCAAAGGACTC
CCTGGCTTGGCTCTCTCTCATAAAGGAAGAGCTAGGAGATGAGTGGCTGAAGCCAGAACT
CTTTCGAATAGGTGCCAGCACCCTCCTAGCAGACATCGAGAGGCAGATTTACCATCATGT
GACTGGAAGATATGCAGCTTATCATGATCTTCCGATGTCTTAGAACAGCAATAAGTCCTT
CCCAACAATGTTTAAAAATTCTTTTTCTACGTGATCCCTAAAATCATTTAATAAAAAATG
GGGGACTAGGTAACTGACCTTTTCCCTTAAAATTTCCATAGAATTTAACTCAAAGAATGA
AAGGGACAAACCAAATTATCTACACATGGTCCCCACTTCAGGCACATCTGAAAGGTCTTA
ATTACCAGAAGAGCTGCAATGTTAATTTTGTGACAGTTTTCACTTAAGAACTCTGGGTAA
AATGTTCATGGTAGCTTTGACAACATTAAGTTCTAAGGAAGTGGAATGTTGACTTGCCTA
AGAACCATGCTGCAGCATAAGAAAACAGGGTGCCCTGTACTACCAACTTTGGGAGTCAAT
CACTCAGCACTGAATTCCTGCCGGGAAGATCCATCTTTAATTTTTGCAGCACATATGCTC
TTTTACTAATTGTTTTGCTAATGAAATTTCTGTCATTGTTCTATGAAACTATGGGTATAT
CATTGAATTTTTTTTAATTAAAAAAATTCCTTTTTTTTATTATTAAAAAACCCTTTAAAT
TGTAATAATACATATTAAAAGGTTAATCCATTAAACATACAAAGAGGTAAAAAAAAAAAA
AAAAAAAAAAAA
|
|
gi|61882157|ref|XP_614363.1| |
Protein identifier
|
gi|61882157|ref|XP_614363.1| |
|
74-216, gnl|bosTau2|chr18 (42550842-42550700) |
|
74-216, gnl|canFam2|chr27 (33738807-33738635) |
|
74-216, gnl|danRer3|chr13 (10773758-10773929) |
|
74-216, gnl|dasNov1|scaffold_124593 (925-753) |
|
74-216, gnl|echTel1|scaffold_280943 (10885-10713) |
|
74-216, gnl|fr1|chrUn (268491497-268491328) |
|
74-216, gnl|galGal2|chr1 (59751426-59751597) |
|
74-216, gnl|hg17|chr12 (16026472-16026644) |
|
74-216, gnl|Hg17|chr12 (16026508-16026650) |
|
74-216, gnl|loxAfr1|scaffold_84769 (4767-4939) |
|
74-216, gnl|mm7|chr6 (137841430-137841601) |
|
74-216, gnl|Mm7|chr6 (137841465-137841607) |
|
74-216, gnl|monDom2|scaffold_31 (9926995-9926822) |
|
74-216, gnl|oryCun1|scaffold_207538 (43376-43204) |
|
74-216, gnl|panTro1|chrUn_random (42301470-42301642) |
|
74-216, gnl|rheMac2|chr11 (16381445-16381617) |
|
74-216, gnl|rn3|chr4 (175166826-175166997) |
|
74-216, gnl|tetNig1|chrUn_random (48237626-48237796) |
| |
|
892-1141, gnl|bosTau2|chr2 (85788805-85788575) |
|
892-1141, gnl|Hg17|chr12 (16081337-16081575) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
74-216, gnl|bosTau2|chr18 (42550842-42550700) |
|
74-216, gnl|canFam2|chr27 (33738807-33738635) |
|
74-216, gnl|danRer3|chr13 (10773758-10773929) |
|
74-216, gnl|dasNov1|scaffold_124593 (925-753) |
|
74-216, gnl|echTel1|scaffold_280943 (10885-10713) |
|
74-216, gnl|fr1|chrUn (268491497-268491328) |
|
74-216, gnl|galGal2|chr1 (59751426-59751597) |
|
74-216, gnl|hg17|chr12 (16026472-16026644) |
|
74-216, gnl|Hg17|chr12 (16026508-16026650) |
|
74-216, gnl|loxAfr1|scaffold_84769 (4767-4939) |
|
74-216, gnl|mm7|chr6 (137841430-137841601) |
|
74-216, gnl|Mm7|chr6 (137841465-137841607) |
|
74-216, gnl|monDom2|scaffold_31 (9926995-9926822) |
|
74-216, gnl|oryCun1|scaffold_207538 (43376-43204) |
|
74-216, gnl|panTro1|chrUn_random (42301470-42301642) |
|
74-216, gnl|rheMac2|chr11 (16381445-16381617) |
|
74-216, gnl|rn3|chr4 (175166826-175166997) |
|
74-216, gnl|tetNig1|chrUn_random (48237626-48237796) |
| |
|
892-1141, gnl|bosTau2|chr2 (85788805-85788575) |
|
892-1141, gnl|Hg17|chr12 (16081337-16081575) |
|
cbe (0.478469) |
|
ret (0.257467) |
|
ese (0.253004) |
|
spc (0.226732) |
|
cmu (0.186393) |
|
eye (0.170503) |
|
cut (0.169924) |
|
nje (0.16592) |
|
csk (0.140746) |
|
ste (0.135208) |
|
pla (0.133672) |
|
kid (0.129735) |
|
ova (0.129132) |
|
tra (0.123092) |
|
ebs (0.118301) |
|
cty (0.10408) |
|
cbe (0.478469) |
|
ret (0.257467) |
|
ese (0.253004) |
|
spc (0.226732) |
|
cmu (0.186393) |
|
eye (0.170503) |
|
cut (0.169924) |
|
nje (0.16592) |
|
csk (0.140746) |
|
ste (0.135208) |
|
pla (0.133672) |
|
kid (0.129735) |
|
ova (0.129132) |
|
tra (0.123092) |
|
ebs (0.118301) |
|
cty (0.10408) |
