Non-Coding RNA Search

Ss1.1-Pig4-TMW8017L01.5

Sequence:


               
               GAAATCCGGAGCCCCACTGCCCGCTCCCAAATGCTCTCCTTGCAGCTTCCCAGGCAGAGT
TACGTGGTGTGTTTCTGAGGTCCTCACCAAGGCGTGACTGCGGGGGGGTGACTGGCACCC
TTGAGGCCAGCGCCAACCCTTTTTGAGGTACACCCTCTCCCCCCCACCAAATAAATAGTC
AATGTCGTTTAGCTAATAACGTTGCAAAGTCCCTGGCCGAGTCGGCAGCCGCCTACACAA
AGGCAACGGCGCGGAAGTGTTTGCTGGAAAAAGTGGAGGTGATCACCGGGGAGGAGGCAG
AGAGCAACGTGTTGCACATCCAGTGTAAGCTGTTTGTCTTTGACAAGACCTCACAGTCGT
GGGTGGAGCGAGGCCGGGGGCTACTCAGACTCAATGACATGGCATCGACCGACGACGGGA
CGTTACAGTCCCGTATTGCCTTGTTTTAGAGCAAAGGGATCTGTTTTGAGGCATTCTCAA
TAGTTCAGAGACTTATAAAGACTGTAACAAACACCTTCTCTTACCACCCAGAGAGAGCAG
CTGTGACGATTTGTCACAGTGGGAAGGTCTTCTTGATCTCGGCCAGCTCCAAGGACACAG
GCCAGCTGTATGCAGCCCTACACCACCGCATCCTGGCCCTGCGCAGCCGAGTGGAGCAGG
AGCAGGAGGCCAAGACACCTGCCCCGGAGCCTGGAGCAGCTCCATCCAATGAGGATGACA
GTGACGATGATGACGTCCTGGCTCCATCGGGAGCCACTGGAAGTGGTGAGCCAGGCGCTG
GTGACGAAGGGGACGGGCAGACAGCTGGGAGCACATAGCGCCGGGAGCCAGCTGCCCACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATCCGGAGCCCCACTGCCCGCTCCCAAATGCTCTCCTTGCAGCTTCCCAGGCAGAGT
TACGTGGTGTGTTTCTGAGGTCCTCACCAAGGCGTGACTGCGGGGGGGTGACTGGCACCC
TTGAGGCCAGCGCCAACCCTTTTTGAGGTACACCCTCTCCCCCCCACCAAATAAATAGTC
AATGTCGTTTAGCTAATAACGTTGCAAAGTCCCTGGCCGAGTCGGCAGCCGCCTACACAA
AGGCAACGGCGCGGAAGTGTTTGCTGGAAAAAGTGGAGGTGATCACCGGGGAGGAGGCAG
AGAGCAACGTGTTGCACATCCAGTGTAAGCTGTTTGTCTTTGACAAGACCTCACAGTCGT
GGGTGGAGCGAGGCCGGGGGCTACTCAGACTCAATGACATGGCATCGACCGACGACGGGA
CGTTACAGTCCCGTATTGCCTTGTTTTAGAGCAAAGGGATCTGTTTTGAGGCATTCTCAA
TAGTTCAGAGACTTATAAAGACTGTAACAAACACCTTCTCTTACCACCCAGAGAGAGCAG
CTGTGACGATTTGTCACAGTGGGAAGGTCTTCTTGATCTCGGCCAGCTCCAAGGACACAG
GCCAGCTGTATGCAGCCCTACACCACCGCATCCTGGCCCTGCGCAGCCGAGTGGAGCAGG
AGCAGGAGGCCAAGACACCTGCCCCGGAGCCTGGAGCAGCTCCATCCAATGAGGATGACA
GTGACGATGATGACGTCCTGGCTCCATCGGGAGCCACTGGAAGTGGTGAGCCAGGCGCTG
GTGACGAAGGGGACGGGCAGACAGCTGGGAGCACATAGCGCCGGGAGCCAGCTGCCCACG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51316520|sp|Q9CT10|RANB3_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51316520|sp|Q9CT10|RANB3_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               620-736, - strand, RNAz p=0.57283

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               620-736, - strand, RNAz p=0.57283

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               144-316, gnl|bosTau2|chr7 (13190408-13190579)
               

               
               144-316, gnl|canFam2|chr20 (57115437-57115303)
               

               
               144-316, gnl|danRer3|chr11 (3397250-3397381)
               

               
               144-316, gnl|dasNov1|scaffold_17420 (9400-9266)
               

               
               144-316, gnl|echTel1|scaffold_23795 (1023-889)
               

               
               144-316, gnl|fr1|chrUn (101413993-101413859)
               

               
               144-316, gnl|galGal2|chr28 (718240-718106)
               

               
               144-316, gnl|hg17|chr19 (5874201-5874335)
               

               
               144-316, gnl|Hg17|chr19 (5874378-5874206)
               

               
               144-316, gnl|loxAfr1|scaffold_214149 (682-791)
               

               
               144-316, gnl|mm7|chr17 (54918114-54917992)
               

               
               144-316, gnl|monDom2|scaffold_85 (3879800-3879934)
               

               
               144-316, gnl|oryCun1|scaffold_196917 (5967-6101)
               

               
               144-316, gnl|panTro1|chr20 (6220394-6220528)
               

               
               144-316, gnl|rheMac2|chr19 (5826027-5826161)
               

               
               144-316, gnl|rn3|chrUn (25070888-25071017)
               

               
               144-316, gnl|tetNig1|chr15_random (2581870-2582001)
               

               
               144-316, gnl|xenTro1|scaffold_87 (1920981-1920847)
               


               
               581-775, gnl|bosTau2|chr7 (13194218-13194412)
               

               
               581-775, gnl|Hg17|chr19 (5868992-5868795)
               

               
               581-775, gnl|Mm7|chr17 (54920418-54920615)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-316, gnl|bosTau2|chr7 (13190408-13190579)
               

               
               144-316, gnl|canFam2|chr20 (57115437-57115303)
               

               
               144-316, gnl|danRer3|chr11 (3397250-3397381)
               

               
               144-316, gnl|dasNov1|scaffold_17420 (9400-9266)
               

               
               144-316, gnl|echTel1|scaffold_23795 (1023-889)
               

               
               144-316, gnl|fr1|chrUn (101413993-101413859)
               

               
               144-316, gnl|galGal2|chr28 (718240-718106)
               

               
               144-316, gnl|hg17|chr19 (5874201-5874335)
               

               
               144-316, gnl|Hg17|chr19 (5874378-5874206)
               

               
               144-316, gnl|loxAfr1|scaffold_214149 (682-791)
               

               
               144-316, gnl|mm7|chr17 (54918114-54917992)
               

               
               144-316, gnl|monDom2|scaffold_85 (3879800-3879934)
               

               
               144-316, gnl|oryCun1|scaffold_196917 (5967-6101)
               

               
               144-316, gnl|panTro1|chr20 (6220394-6220528)
               

               
               144-316, gnl|rheMac2|chr19 (5826027-5826161)
               

               
               144-316, gnl|rn3|chrUn (25070888-25071017)
               

               
               144-316, gnl|tetNig1|chr15_random (2581870-2582001)
               

               
               144-316, gnl|xenTro1|scaffold_87 (1920981-1920847)
               


               
               581-775, gnl|bosTau2|chr7 (13194218-13194412)
               

               
               581-775, gnl|Hg17|chr19 (5868992-5868795)
               

               
               581-775, gnl|Mm7|chr17 (54920418-54920615)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               col (0.195008)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	144-316, gnl\|bosTau2\|chr7 (13190408-13190579)
	144-316, gnl\|canFam2\|chr20 (57115437-57115303)
	144-316, gnl\|danRer3\|chr11 (3397250-3397381)
	144-316, gnl\|dasNov1\|scaffold_17420 (9400-9266)
	144-316, gnl\|echTel1\|scaffold_23795 (1023-889)
	144-316, gnl\|fr1\|chrUn (101413993-101413859)
	144-316, gnl\|galGal2\|chr28 (718240-718106)
	144-316, gnl\|hg17\|chr19 (5874201-5874335)
	144-316, gnl\|Hg17\|chr19 (5874378-5874206)
	144-316, gnl\|loxAfr1\|scaffold_214149 (682-791)
	144-316, gnl\|mm7\|chr17 (54918114-54917992)
	144-316, gnl\|monDom2\|scaffold_85 (3879800-3879934)
	144-316, gnl\|oryCun1\|scaffold_196917 (5967-6101)
	144-316, gnl\|panTro1\|chr20 (6220394-6220528)
	144-316, gnl\|rheMac2\|chr19 (5826027-5826161)
	144-316, gnl\|rn3\|chrUn (25070888-25071017)
	144-316, gnl\|tetNig1\|chr15_random (2581870-2582001)
	144-316, gnl\|xenTro1\|scaffold_87 (1920981-1920847)

	581-775, gnl\|bosTau2\|chr7 (13194218-13194412)
	581-775, gnl\|Hg17\|chr19 (5868992-5868795)
	581-775, gnl\|Mm7\|chr17 (54920418-54920615)