Non-Coding RNA Search

Ss1.1-Pig4-TMW8017L08.5

Sequence:


               
               ATCATTGAAATCCTGGCTTCTCGGACCAAGAACCAGCTGCAGGAGATAATGAAGGCGTAT
GAGGAGGACTATGGGTCCAGCCTGGAGGAAGACATACAAGCAGATACCAGTGGCTACCTG
GAGAGGATCCTGGTGTGCCTTCTACAGGGCAGCAGAGATGACCTGAGTGGCTTCGTGGAC
CCAGGACTGGCCCTCCAGGATGCCCAGGATCTGTATGCAGCGGGTGAGAAGATTCGTGGG
ACTGATGAGATGAAGTTCATCACCATCTTGTGCACACGCAGTGCCACACACCTGATGAGA
GTGTTTGAGGAATATGAGAAAATCGCCAACAAGAGCATTGAGGACAGCATCAAGAGTGAG
ACCCATGGCTCGCTGGAGGAGGCCATGCTCACAGTGGTAAAATGTACCCGGAACCTCCAC
AGCTACTTTGCCGAGAGACTCTACTACGCCATGAAGGGAGCAGGAACTCGTGATGGGACC
CTGATCAGAAACATCGTCTCGAGGAGTGAGATCGACTTAAATCTCATCAAGGGTCAGTTC
AACAAGATGTACGGCAAGACCCTCAGCAGCATGATCATGGAAGACACCAGTGGCGACTAC
AAGAATGCCTTGCTGAACCTGGTGGGCAGCGACCCCTGAAGGCTCAGAAAGACAAGAGCA
AAGGCCAAGAAGCCGGAGCCCCTGGGTCCTGCTTGCTCAAACTTGGCCATGGGGGGGCGG
GGGAGGGGAGGCCACAGCATGCCTTTCAGTCTTCTATCTCTCAGCTTCCAGTGCTATTCA
GCCAGGTTCTCTCTGACCCAGAAGGAAGGATCAGCCTGGGGCTCCTACCTCCCCTAGACT
CCCAGGTCAATTCCAGATGTGAACACACTGCCAATCTCAGCATGAATCTGGTCTGACAAC
TACCTGGACAAGAAGGGGTCTGCAAGGGCTCGTGATTGTTTCTTCCTTTCTACACAGGTC
ATACAGTCCCCTTGTGCCTGACAGGTCACAGAGTCCCCTAGACACAAGGTACACAGATAT
TCAGTCCCACCTCCATTTACTAATCTGGATCCGCAGAGACAGGACCATGGAATATGGAAT
TTTAATAAGAATCTCAGCTGATACCCTTCTCTTTCAGGCAAACAGAGAAGACTGTGAGAG
CCCATGTGTTTCAGAGCACATACTCATGGGTAGCTTGAGAAAGAAACACACACACACCCA
GGCCACAGGGCTGCCACTAACATTCATTTACCAGCTTCTTCGAAAATATTAGGCTACAGG
TAGACCAACAGAGAGAGCTGCAAGTAAGTGTCCTGACACAAGGACACTGTGTTCCAAGAG
GCTCGGGCTTCTCTAGTCCTTGATCAAATTAGCTGCTCCTTCCTTCCATGACACAAGCAC
GGAACAGCTCTAATCCTGACCAAATGGCAACAGCAGCTTGTTAGAGGAGAAGCTGAGATG
CCTGTGTCATGCTTTCAGAATAATAAAGATTTGTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCATTGAAATCCTGGCTTCTCGGACCAAGAACCAGCTGCAGGAGATAATGAAGGCGTAT
GAGGAGGACTATGGGTCCAGCCTGGAGGAAGACATACAAGCAGATACCAGTGGCTACCTG
GAGAGGATCCTGGTGTGCCTTCTACAGGGCAGCAGAGATGACCTGAGTGGCTTCGTGGAC
CCAGGACTGGCCCTCCAGGATGCCCAGGATCTGTATGCAGCGGGTGAGAAGATTCGTGGG
ACTGATGAGATGAAGTTCATCACCATCTTGTGCACACGCAGTGCCACACACCTGATGAGA
GTGTTTGAGGAATATGAGAAAATCGCCAACAAGAGCATTGAGGACAGCATCAAGAGTGAG
ACCCATGGCTCGCTGGAGGAGGCCATGCTCACAGTGGTAAAATGTACCCGGAACCTCCAC
AGCTACTTTGCCGAGAGACTCTACTACGCCATGAAGGGAGCAGGAACTCGTGATGGGACC
CTGATCAGAAACATCGTCTCGAGGAGTGAGATCGACTTAAATCTCATCAAGGGTCAGTTC
AACAAGATGTACGGCAAGACCCTCAGCAGCATGATCATGGAAGACACCAGTGGCGACTAC
AAGAATGCCTTGCTGAACCTGGTGGGCAGCGACCCCTGAAGGCTCAGAAAGACAAGAGCA
AAGGCCAAGAAGCCGGAGCCCCTGGGTCCTGCTTGCTCAAACTTGGCCATGGGGGGGCGG
GGGAGGGGAGGCCACAGCATGCCTTTCAGTCTTCTATCTCTCAGCTTCCAGTGCTATTCA
GCCAGGTTCTCTCTGACCCAGAAGGAAGGATCAGCCTGGGGCTCCTACCTCCCCTAGACT
CCCAGGTCAATTCCAGATGTGAACACACTGCCAATCTCAGCATGAATCTGGTCTGACAAC
TACCTGGACAAGAAGGGGTCTGCAAGGGCTCGTGATTGTTTCTTCCTTTCTACACAGGTC
ATACAGTCCCCTTGTGCCTGACAGGTCACAGAGTCCCCTAGACACAAGGTACACAGATAT
TCAGTCCCACCTCCATTTACTAATCTGGATCCGCAGAGACAGGACCATGGAATATGGAAT
TTTAATAAGAATCTCAGCTGATACCCTTCTCTTTCAGGCAAACAGAGAAGACTGTGAGAG
CCCATGTGTTTCAGAGCACATACTCATGGGTAGCTTGAGAAAGAAACACACACACACCCA
GGCCACAGGGCTGCCACTAACATTCATTTACCAGCTTCTTCGAAAATATTAGGCTACAGG
TAGACCAACAGAGAGAGCTGCAAGTAAGTGTCCTGACACAAGGACACTGTGTTCCAAGAG
GCTCGGGCTTCTCTAGTCCTTGATCAAATTAGCTGCTCCTTCCTTCCATGACACAAGCAC
GGAACAGCTCTAATCCTGACCAAATGGCAACAGCAGCTTGTTAGAGGAGAAGCTGAGATG
CCTGTGTCATGCTTTCAGAATAATAAAGATTTGTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q921D0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q921D0_MOUSE

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               2-625, gnl|bosTau2|chr22 (3943449-3942832)
               

               
               2-625, gnl|Hg17|chr4 (154587139-154586532)
               

               
               2-625, gnl|Mm7|chr11 (78658164-78658917)
               


               
               711-1256, gnl|bosTau2|chr28 (32209728-32209193)
               

               
               711-1256, gnl|Hg17|chr10 (46578758-46578267)
               

               
               711-1256, gnl|Mm7|chr14 (31532442-31532923)
               


               
               1265-1476, gnl|bosTau2|chr28 (32209158-32208950)
               

               
               1265-1476, gnl|Hg17|chr10 (46578235-46577997)
               

               
               1265-1476, gnl|Mm7|chr14 (31532954-31533181)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-625, gnl|bosTau2|chr22 (3943449-3942832)
               

               
               2-625, gnl|Hg17|chr4 (154587139-154586532)
               

               
               2-625, gnl|Mm7|chr11 (78658164-78658917)
               


               
               711-1256, gnl|bosTau2|chr28 (32209728-32209193)
               

               
               711-1256, gnl|Hg17|chr10 (46578758-46578267)
               

               
               711-1256, gnl|Mm7|chr14 (31532442-31532923)
               


               
               1265-1476, gnl|bosTau2|chr28 (32209158-32208950)
               

               
               1265-1476, gnl|Hg17|chr10 (46578235-46577997)
               

               
               1265-1476, gnl|Mm7|chr14 (31532954-31533181)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ton (0.526501)
               

               
               cut (0.509771)
               

               
               jca (0.45584)
               

               
               nca (0.410621)
               

               
               nco (0.323468)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.526501)
               

               
               cut (0.509771)
               

               
               jca (0.45584)
               

               
               nca (0.410621)
               

               
               nco (0.323468)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eje (0.0988338)

	2-625, gnl\|bosTau2\|chr22 (3943449-3942832)
	2-625, gnl\|Hg17\|chr4 (154587139-154586532)
	2-625, gnl\|Mm7\|chr11 (78658164-78658917)

	711-1256, gnl\|bosTau2\|chr28 (32209728-32209193)
	711-1256, gnl\|Hg17\|chr10 (46578758-46578267)
	711-1256, gnl\|Mm7\|chr14 (31532442-31532923)

	1265-1476, gnl\|bosTau2\|chr28 (32209158-32208950)
	1265-1476, gnl\|Hg17\|chr10 (46578235-46577997)
	1265-1476, gnl\|Mm7\|chr14 (31532954-31533181)

	ton (0.526501)
	cut (0.509771)
	jca (0.45584)
	nca (0.410621)
	nco (0.323468)
	nep (0.183925)
	eye (0.170503)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	eje (0.0988338)