Non-Coding RNA Search

Ss1.1-Pig4-TMW8017L10.3

Sequence:


               
               GAAAGGGACAGCATTAAACATTCCCAGTGGATGGGTCGCGTTTTCAAAGACTTTACCCTC
TTTTCAAAGTCCATCCATTTCCCTCCCATTGCTCCATGGCTGATGGAGGCCAAAGACAAC
CCCAGGGTTTTCATAGGAAATTCACTGGAATTGAGCGCAATTGTCTTTGTCGTCTTTTTT
TTTTTTTTTTAAATCTTATTCTGTTGTTGACAGCGTTTGGGTATTTTTTTAAAGGCCTCA
CGATAAGTTATTACCGGTCCCCTCTTTGTTTTTCAAAGACATGTGGTGATATAGTTTTTA
AAAATAACTATTTTGTTATAGATCAAAATATGCATAAAACTGTACAGAAATATTTTGTAA
ATGTATTGATTTTAAAAAAAAAGAGACGCTGTAAATAAAGTTTAAAAAAAAAACAAGAGA
CTTCAAATGGCACACACTGAAAGATGTAGATATTTTGCTATTTATTTAAAGGAGTATTTT
AAGAGATACTGAACTATCTGAAATTGACCAGTAATCAAAGTTCCAATCATCCCGAGTGCT
TTTCCTCGCGGTAGAATGTGATTCTCGGAAACGATTGCACTACCCGCCCATTTTTGCACC
TTTTCTGTCTTTTCATTTAGCAGAAAAACAACAATGAAATTGTGCCTTAGCTGTATTTTT
TTGTCTAGGGGAGTTTGTTTCTGTCTGACAAAGCAAAGTTTTTTGCAGAAAACAGTGGAT
GTATTAAATACTGTATCATACCAAAAACACTGCAGGTGTATAGATGCTTTCTGTCATACT
GTGTTTTCAGATGCAGAATTTTAAAATTAAAAAAAAAAATACTGTCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGGGACAGCATTAAACATTCCCAGTGGATGGGTCGCGTTTTCAAAGACTTTACCCTC
TTTTCAAAGTCCATCCATTTCCCTCCCATTGCTCCATGGCTGATGGAGGCCAAAGACAAC
CCCAGGGTTTTCATAGGAAATTCACTGGAATTGAGCGCAATTGTCTTTGTCGTCTTTTTT
TTTTTTTTTTAAATCTTATTCTGTTGTTGACAGCGTTTGGGTATTTTTTTAAAGGCCTCA
CGATAAGTTATTACCGGTCCCCTCTTTGTTTTTCAAAGACATGTGGTGATATAGTTTTTA
AAAATAACTATTTTGTTATAGATCAAAATATGCATAAAACTGTACAGAAATATTTTGTAA
ATGTATTGATTTTAAAAAAAAAGAGACGCTGTAAATAAAGTTTAAAAAAAAAACAAGAGA
CTTCAAATGGCACACACTGAAAGATGTAGATATTTTGCTATTTATTTAAAGGAGTATTTT
AAGAGATACTGAACTATCTGAAATTGACCAGTAATCAAAGTTCCAATCATCCCGAGTGCT
TTTCCTCGCGGTAGAATGTGATTCTCGGAAACGATTGCACTACCCGCCCATTTTTGCACC
TTTTCTGTCTTTTCATTTAGCAGAAAAACAACAATGAAATTGTGCCTTAGCTGTATTTTT
TTGTCTAGGGGAGTTTGTTTCTGTCTGACAAAGCAAAGTTTTTTGCAGAAAACAGTGGAT
GTATTAAATACTGTATCATACCAAAAACACTGCAGGTGTATAGATGCTTTCTGTCATACT
GTGTTTTCAGATGCAGAATTTTAAAATTAAAAAAAAAAATACTGTCAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               74-191, - strand, RNAz p=0.948952
               

               
               689-826, + strand, RNAz p=0.754881

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               74-191, - strand, RNAz p=0.948952
               

               
               689-826, + strand, RNAz p=0.754881

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-826, gnl|bosTau2|chr25 (12350903-12350077)
               

               
               1-826, gnl|Hg17|chr16 (17104513-17103691)
               

               
               1-826, gnl|Mm7|chr7 (113595298-113596144)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-826, gnl|bosTau2|chr25 (12350903-12350077)
               

               
               1-826, gnl|Hg17|chr16 (17104513-17103691)
               

               
               1-826, gnl|Mm7|chr7 (113595298-113596144)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               lyg (0.266205)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               cag (0.151194)
               

               
               nca (0.136874)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.266205)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               cag (0.151194)
               

               
               nca (0.136874)

	74-191, - strand, RNAz p=0.948952
	689-826, + strand, RNAz p=0.754881

	1-826, gnl\|bosTau2\|chr25 (12350903-12350077)
	1-826, gnl\|Hg17\|chr16 (17104513-17103691)
	1-826, gnl\|Mm7\|chr7 (113595298-113596144)

	lyg (0.266205)
	cbe (0.239234)
	aor (0.195274)
	cag (0.151194)
	nca (0.136874)