Non-Coding RNA Search

Ss1.1-Pig4-TMW8017L14.5

Sequence:


               
               TGGGATCTTCCTGGACTACGATGCCAGCACCGTCTCCTTCTACAACATAGTGACCACGGC
TCCCTCATCTACAGCTTCTCAGAATGTGCTTTCGCTGGACCCGTTCGGCCCTTCTTCAAT
CCTGGTTTCAATGACGGTGGAAGAAATGCACCCCCCCTGACCCTCTGTCCACTGAGGACG
GGCTGGTAGGGATCCAGAGACTGTCGGTGGCAGCGCTTCTCTGTTAGCCCCCCTCTCAGC
CAAGAGCCCTGCCTCATTTGCCCCTGGACGCCCAACCACCGTTACCTCTGCAGAGGTGTC
AGGATATCAGCAAGCAAACGCTGGCAGAGAGGTCACGGGGGGTCTGTGTCAAATGACCTT
CAACACCCAGATTCCTGCCCTCCGTTGCTTCATGAGCCCCTCCATAAGCCAGCCACTCGT
ATCTGGCCCCAAACTCATCTGGATCAACTGAAGCATGTTCTCCTCTCCATCTCCGGGCCT
CTGCTCAGATCTCTCCTGTAGATCTTGCAAAGGGCTTCCTAAATAAATTGGGCCTCCGTC
TGCCCCACCACTCTTGTCTCGTACACCTCTGGGATTAGCTTTCCGACATGGTCACGTCTC
ATCACGGATGGCTCCACGCTGCTACGGAAAAAGAGCCATTAGCAGCCATCCTTTTAAAAT
AAAGGCTGAGGAGTTCCCGCTGTAGCACAATGGGATTGGCGGCGTCTTGGGAGCGCTGGG
ACATGCAGGTTGGACCCCCGGCCCCGCACAGTGGGTTAAGGATCCGGCGTTGCAGCACCT
GCAGCTCAGGTCGCAACTGCGTCTCAGATATGATCCCTGGTCCAGGAACTCCATGTGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGATCTTCCTGGACTACGATGCCAGCACCGTCTCCTTCTACAACATAGTGACCACGGC
TCCCTCATCTACAGCTTCTCAGAATGTGCTTTCGCTGGACCCGTTCGGCCCTTCTTCAAT
CCTGGTTTCAATGACGGTGGAAGAAATGCACCCCCCCTGACCCTCTGTCCACTGAGGACG
GGCTGGTAGGGATCCAGAGACTGTCGGTGGCAGCGCTTCTCTGTTAGCCCCCCTCTCAGC
CAAGAGCCCTGCCTCATTTGCCCCTGGACGCCCAACCACCGTTACCTCTGCAGAGGTGTC
AGGATATCAGCAAGCAAACGCTGGCAGAGAGGTCACGGGGGGTCTGTGTCAAATGACCTT
CAACACCCAGATTCCTGCCCTCCGTTGCTTCATGAGCCCCTCCATAAGCCAGCCACTCGT
ATCTGGCCCCAAACTCATCTGGATCAACTGAAGCATGTTCTCCTCTCCATCTCCGGGCCT
CTGCTCAGATCTCTCCTGTAGATCTTGCAAAGGGCTTCCTAAATAAATTGGGCCTCCGTC
TGCCCCACCACTCTTGTCTCGTACACCTCTGGGATTAGCTTTCCGACATGGTCACGTCTC
ATCACGGATGGCTCCACGCTGCTACGGAAAAAGAGCCATTAGCAGCCATCCTTTTAAAAT
AAAGGCTGAGGAGTTCCCGCTGTAGCACAATGGGATTGGCGGCGTCTTGGGAGCGCTGGG
ACATGCAGGTTGGACCCCCGGCCCCGCACAGTGGGTTAAGGATCCGGCGTTGCAGCACCT
GCAGCTCAGGTCGCAACTGCGTCTCAGATATGATCCCTGGTCCAGGAACTCCATGTGCCG

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-459, gnl|bosTau2|chr15 (32321629-32322093)
               

               
               1-459, gnl|Hg17|chr11 (4363298-4362843)
               

               
               1-459, gnl|Mm7|chr7 (98609638-98609102)
               


               
               502-669, gnl|bosTau2|chr15 (32322395-32322560)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-459, gnl|bosTau2|chr15 (32321629-32322093)
               

               
               1-459, gnl|Hg17|chr11 (4363298-4362843)
               

               
               1-459, gnl|Mm7|chr7 (98609638-98609102)
               


               
               502-669, gnl|bosTau2|chr15 (32322395-32322560)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cly (0.241284)
               

               
               mas (0.210305)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.241284)
               

               
               mas (0.210305)
               

               
               nmm (0.132802)

	1-459, gnl\|bosTau2\|chr15 (32321629-32322093)
	1-459, gnl\|Hg17\|chr11 (4363298-4362843)
	1-459, gnl\|Mm7\|chr7 (98609638-98609102)

	502-669, gnl\|bosTau2\|chr15 (32322395-32322560)