Non-Coding RNA Search

Ss1.1-Pig4-TMW8017M21.5

Sequence:


               
               GAACATGCCAGAATGTGTCTCTGAAGAGGCTCGCTCACTCATTCAACAGCTCTTACAGTT
CAACCCTGTGGAGCGTCTTGGTGCTGGAGTTGCTGGTGTTGAAGATATCAAATCTCATCC
ATTTTTTACCCCTGTGGATTGGGCAGAACTGATGAGATGAACATCATGCAGGGTTCTTGC
ACACATTCTGATCTTCTCTGTGACAGGCATCTCCAGCACGGAGGCAGCTCTGCCTCATGG
TCCCTTATGGAGCCCCAAAACGTTGGGATGAAGATCTTTAGAGGAAATGGGGGAAGAAAA
AGCTGAAAGAGAACAATTCCTTTACAGTTACTGAATGGACAAGATACTGGCCACATTTGC
AAGGGGCTGTTCTGTACAAACATTTAACCAAGGTGTGATCTTTATTTTACCTGCCTTTAG
TGTTGCAGAGGAGTTGTAAACCCAACTGAAAGAGGAAAGCCCTTCAAGAACTTCCTCTGA
TATGAAGCTCCAAGTGTAGAATGAAGTGTTAACTTGAAAGGAGGACCTTTGCATGGCAGC
TGACAGTACTATCTGCTAAGCAAGATTGGTTTAATATGATCAAATTAATATTTGCCGAGT
AATATACTAAAAGTGCTTCATGAATAATGTCATCTGTAGAGCTTAAAAAGCGTGGAAAAA
ATATACACATCATGTCTGATAGGAAAGCTGAACCACAATGCTATATAATTAATATATATG
TATGTCAGATGTGGCGCCATATTCATTCTTGCAGAAGTCCATGTGAAAAGAAGACACTTC
GTGTTGTCAGCTTGTACTTTGCTGGTTGGTACTGCCAGCGGGAGGGTTCATATAAACCCT
AAGTCCCTTTCTTCCACCTCTTTTTCCACTTTCTCCACCCATTGCCCATTCTTTCATATT
CTGTTCTTCCTACCCCTGCGAATACATATGCAACAGAAAAGGGAAGGGAGTATTTATTTC
CCCCAATTGTATCAACTTAATAAGAACTACAGAATCATGATGTAAAATAAACATGGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACATGCCAGAATGTGTCTCTGAAGAGGCTCGCTCACTCATTCAACAGCTCTTACAGTT
CAACCCTGTGGAGCGTCTTGGTGCTGGAGTTGCTGGTGTTGAAGATATCAAATCTCATCC
ATTTTTTACCCCTGTGGATTGGGCAGAACTGATGAGATGAACATCATGCAGGGTTCTTGC
ACACATTCTGATCTTCTCTGTGACAGGCATCTCCAGCACGGAGGCAGCTCTGCCTCATGG
TCCCTTATGGAGCCCCAAAACGTTGGGATGAAGATCTTTAGAGGAAATGGGGGAAGAAAA
AGCTGAAAGAGAACAATTCCTTTACAGTTACTGAATGGACAAGATACTGGCCACATTTGC
AAGGGGCTGTTCTGTACAAACATTTAACCAAGGTGTGATCTTTATTTTACCTGCCTTTAG
TGTTGCAGAGGAGTTGTAAACCCAACTGAAAGAGGAAAGCCCTTCAAGAACTTCCTCTGA
TATGAAGCTCCAAGTGTAGAATGAAGTGTTAACTTGAAAGGAGGACCTTTGCATGGCAGC
TGACAGTACTATCTGCTAAGCAAGATTGGTTTAATATGATCAAATTAATATTTGCCGAGT
AATATACTAAAAGTGCTTCATGAATAATGTCATCTGTAGAGCTTAAAAAGCGTGGAAAAA
ATATACACATCATGTCTGATAGGAAAGCTGAACCACAATGCTATATAATTAATATATATG
TATGTCAGATGTGGCGCCATATTCATTCTTGCAGAAGTCCATGTGAAAAGAAGACACTTC
GTGTTGTCAGCTTGTACTTTGCTGGTTGGTACTGCCAGCGGGAGGGTTCATATAAACCCT
AAGTCCCTTTCTTCCACCTCTTTTTCCACTTTCTCCACCCATTGCCCATTCTTTCATATT
CTGTTCTTCCTACCCCTGCGAATACATATGCAACAGAAAAGGGAAGGGAGTATTTATTTC
CCCCAATTGTATCAACTTAATAAGAACTACAGAATCATGATGTAAAATAAACATGGTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61823697|ref|XP_605264.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61823697|ref|XP_605264.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               87-205, - strand, RNAz p=0.764652

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-205, - strand, RNAz p=0.764652

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               48-566, gnl|bosTau2|chr16 (52406017-52405508)
               

               
               48-566, gnl|Hg17|chr1 (209834260-209834766)
               

               
               48-566, gnl|Mm7|chr1 (190327211-190326767)
               


               
               602-1011, gnl|bosTau2|chr16 (52405505-52405109)
               

               
               602-1011, gnl|canFam2|chr7 (14288009-14288625)
               

               
               602-1011, gnl|dasNov1|scaffold_50108 (2812-3451)
               

               
               602-1011, gnl|echTel1|scaffold_278891 (10882-10268)
               

               
               602-1011, gnl|Hg17|chr1 (209834800-209835188)
               

               
               602-1011, gnl|hg17|chr12 (46240128-46240747)
               

               
               602-1011, gnl|loxAfr1|scaffold_21482 (4358-4984)
               

               
               602-1011, gnl|mm7|chr1 (190326880-190326387)
               

               
               602-1011, gnl|monDom2|scaffold_13 (17399777-17400438)
               

               
               602-1011, gnl|oryCun1|scaffold_201326 (95611-95015)
               

               
               602-1011, gnl|panTro1|chr10 (47208002-47208621)
               

               
               602-1011, gnl|rheMac2|chr1 (157182156-157181549)
               

               
               602-1011, gnl|rn3|chr13 (107032143-107031643)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-566, gnl|bosTau2|chr16 (52406017-52405508)
               

               
               48-566, gnl|Hg17|chr1 (209834260-209834766)
               

               
               48-566, gnl|Mm7|chr1 (190327211-190326767)
               


               
               602-1011, gnl|bosTau2|chr16 (52405505-52405109)
               

               
               602-1011, gnl|canFam2|chr7 (14288009-14288625)
               

               
               602-1011, gnl|dasNov1|scaffold_50108 (2812-3451)
               

               
               602-1011, gnl|echTel1|scaffold_278891 (10882-10268)
               

               
               602-1011, gnl|Hg17|chr1 (209834800-209835188)
               

               
               602-1011, gnl|hg17|chr12 (46240128-46240747)
               

               
               602-1011, gnl|loxAfr1|scaffold_21482 (4358-4984)
               

               
               602-1011, gnl|mm7|chr1 (190326880-190326387)
               

               
               602-1011, gnl|monDom2|scaffold_13 (17399777-17400438)
               

               
               602-1011, gnl|oryCun1|scaffold_201326 (95611-95015)
               

               
               602-1011, gnl|panTro1|chr10 (47208002-47208621)
               

               
               602-1011, gnl|rheMac2|chr1 (157182156-157181549)
               

               
               602-1011, gnl|rn3|chr13 (107032143-107031643)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               aor (0.195274)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

	48-566, gnl\|bosTau2\|chr16 (52406017-52405508)
	48-566, gnl\|Hg17\|chr1 (209834260-209834766)
	48-566, gnl\|Mm7\|chr1 (190327211-190326767)

	602-1011, gnl\|bosTau2\|chr16 (52405505-52405109)
	602-1011, gnl\|canFam2\|chr7 (14288009-14288625)
	602-1011, gnl\|dasNov1\|scaffold_50108 (2812-3451)
	602-1011, gnl\|echTel1\|scaffold_278891 (10882-10268)
	602-1011, gnl\|Hg17\|chr1 (209834800-209835188)
	602-1011, gnl\|hg17\|chr12 (46240128-46240747)
	602-1011, gnl\|loxAfr1\|scaffold_21482 (4358-4984)
	602-1011, gnl\|mm7\|chr1 (190326880-190326387)
	602-1011, gnl\|monDom2\|scaffold_13 (17399777-17400438)
	602-1011, gnl\|oryCun1\|scaffold_201326 (95611-95015)
	602-1011, gnl\|panTro1\|chr10 (47208002-47208621)
	602-1011, gnl\|rheMac2\|chr1 (157182156-157181549)
	602-1011, gnl\|rn3\|chr13 (107032143-107031643)

	aor (0.195274)
	gul (0.177588)
	isp (0.150376)
	lnt (0.142308)
	ste (0.135208)
	sug (0.127291)
	thg (0.126791)