Ss1.1-Pig4-TMW8017N12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGCTGGGGCAGGTTCTGCTAGGGCTGCGGCGCTTCGGGAGGTGGCCGGGGCTCGGGAC CTGTCGATTCCTGCGCCGCTTTAGGCAAGGTCCCTTCGACAGAGCCCGGTTACTGGGTTG CGAATCCTCGCCTAGAGACGCGCAAAATGAAGAGGGAGAGCACGAGGAGGCACAGAGGAA AGCCCCAGACGCAGAGTCGTCTCCATCTCTCCCACGCGTCCGGGGACTTGGGACCAAATG TCTTTCCTCACTGGAAAGATTGAAACCCCCGACGCCGCGAGAGGAGTCAGTTCCTCAAGA GCGGGAGTGCTCGAGTGGAGACGAAGGCCAGCCCGGTCCCTCCTTGGCCCAGTCTGCCAC CGAGGACGAAGAACCTCACATCTCCTCTTCCTGGTCAACTTCCAGAGAGGTGCCTTTTCG GACTGGGGAGCTGATTTTAGCTGAGACTAGAAAGAGAGAAACACAATTTAAAAAATTATT TAGGCTGAGTAACGCCGGACACTTAAATAGTAGCTGGGGGACAGTCCCATTCAGGGAGAT CGTGGGGAAGTTCCCCGGCCAGATACTGAGGAGTTCTGCTGGTAAGCACTTCATGCTGAG GAGGCCGACACTGGAGGACTATGTATTACTGATGCAAAGAGGGCCTGCTATCACATATCC AAAGGATATGAATATGATACTGTTGATGATGAATATCCACCCAGGTGATACTGTTTTGGA AGCTGGCTCGGGCTCTGGTGGAATGAGTTTATTTCTATCCAAAGCAGTTGGATTGCAAGG ACGAGTCATAAGTTTTGAAATACGAAAAGACCACCATGAACTGGCTAAGAAGAATTACAA ACACTGGCGTGATTCATGGAAAATGAGTCATGTAGAAGAGTGGCCAGACAACGTGGATTT TATTCATAAGGATATTTCAGGAGCAGCTGAAGATATACAGTCTTTAACATTTGATGCGGT AGCTTTGGATATGCTGAATCCTCAAGTTGCTTTGCCTATTTTATACCCAAATCTTAAACA GGGTGGTATATGTGCTGTCTATCTAGCAAACATCACACAGGTTATTGAACTTTTAGATGG AATTCGTGTATGTGAACTTGCCCTTTCATGTGAAAAGATAAGCGAAGTTATTGTCAGAGA TTGGTTGGTTTGCCTTGCAAAACAGAAAAATGGACTTTTAGCTCAAAAAGTGGAACCTAA AATCAACACAGATTTACAATCACATTCTCAAAAGAAAATTAGAATTGAAGGTGAGATGTT TCAAGAGGATGATCACGAAGAATCACCTTGTGATTTTCCCTATGGATCATTTCCCTATAT TGCTAGACCTATACACTGGCAAACTGGTCATACGGCCTTTCTTGTCAAGTTGAGGAAGTG CAAACCACAACTTAACTGAGTACCTCAGATGACAACTGATTTGAAGACAGATATATATTA AAATAAAACTTTATATTACAAATCACTACTTTTGTAGGTTGGTATTTTTAGCTATTACTA TGATTTGTGTAACTTTTACATGTAATCTTGAAAAAGTAACAAAAGCTCAAGAAAGATGTG TAACATTTCAAAACTCCTTAAATGTCCCATTTTGACACTTGTCTTGCAGTTAGACATTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGCTGGGGCAGGTTCTGCTAGGGCTGCGGCGCTTCGGGAGGTGGCCGGGGCTCGGGAC CTGTCGATTCCTGCGCCGCTTTAGGCAAGGTCCCTTCGACAGAGCCCGGTTACTGGGTTG CGAATCCTCGCCTAGAGACGCGCAAAATGAAGAGGGAGAGCACGAGGAGGCACAGAGGAA AGCCCCAGACGCAGAGTCGTCTCCATCTCTCCCACGCGTCCGGGGACTTGGGACCAAATG TCTTTCCTCACTGGAAAGATTGAAACCCCCGACGCCGCGAGAGGAGTCAGTTCCTCAAGA GCGGGAGTGCTCGAGTGGAGACGAAGGCCAGCCCGGTCCCTCCTTGGCCCAGTCTGCCAC CGAGGACGAAGAACCTCACATCTCCTCTTCCTGGTCAACTTCCAGAGAGGTGCCTTTTCG GACTGGGGAGCTGATTTTAGCTGAGACTAGAAAGAGAGAAACACAATTTAAAAAATTATT TAGGCTGAGTAACGCCGGACACTTAAATAGTAGCTGGGGGACAGTCCCATTCAGGGAGAT CGTGGGGAAGTTCCCCGGCCAGATACTGAGGAGTTCTGCTGGTAAGCACTTCATGCTGAG GAGGCCGACACTGGAGGACTATGTATTACTGATGCAAAGAGGGCCTGCTATCACATATCC AAAGGATATGAATATGATACTGTTGATGATGAATATCCACCCAGGTGATACTGTTTTGGA AGCTGGCTCGGGCTCTGGTGGAATGAGTTTATTTCTATCCAAAGCAGTTGGATTGCAAGG ACGAGTCATAAGTTTTGAAATACGAAAAGACCACCATGAACTGGCTAAGAAGAATTACAA ACACTGGCGTGATTCATGGAAAATGAGTCATGTAGAAGAGTGGCCAGACAACGTGGATTT TATTCATAAGGATATTTCAGGAGCAGCTGAAGATATACAGTCTTTAACATTTGATGCGGT AGCTTTGGATATGCTGAATCCTCAAGTTGCTTTGCCTATTTTATACCCAAATCTTAAACA GGGTGGTATATGTGCTGTCTATCTAGCAAACATCACACAGGTTATTGAACTTTTAGATGG AATTCGTGTATGTGAACTTGCCCTTTCATGTGAAAAGATAAGCGAAGTTATTGTCAGAGA TTGGTTGGTTTGCCTTGCAAAACAGAAAAATGGACTTTTAGCTCAAAAAGTGGAACCTAA AATCAACACAGATTTACAATCACATTCTCAAAAGAAAATTAGAATTGAAGGTGAGATGTT TCAAGAGGATGATCACGAAGAATCACCTTGTGATTTTCCCTATGGATCATTTCCCTATAT TGCTAGACCTATACACTGGCAAACTGGTCATACGGCCTTTCTTGTCAAGTTGAGGAAGTG CAAACCACAACTTAACTGAGTACCTCAGATGACAACTGATTTGAAGACAGATATATATTA AAATAAAACTTTATATTACAAATCACTACTTTTGTAGGTTGGTATTTTTAGCTATTACTA TGATTTGTGTAACTTTTACATGTAATCTTGAAAAAGTAACAAAAGCTCAAGAAAGATGTG TAACATTTCAAAACTCCTTAAATGTCCCATTTTGACACTTGTCTTGCAGTTAGACATTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 338-670, gnl|bosTau2|chr11 (50300490-50300158) | |
| 338-670, gnl|canFam2|chr17 (25859714-25859960) | |
| 338-670, gnl|echTel1|scaffold_260553 (828-582) | |
| 338-670, gnl|fr1|chrUn (54119144-54118892) | |
| 338-670, gnl|galGal2|chr3 (8554857-8555102) | |
| 338-670, gnl|hg17|chr2 (29004090-29004336) | |
| 338-670, gnl|Hg17|chr2 (29004422-29004090) | |
| 338-670, gnl|loxAfr1|scaffold_2968 (117499-117748) | |
| 338-670, gnl|mm7|chr17 (69879439-69879681) | |
| 338-670, gnl|Mm7|chr17 (69879760-69879439) | |
| 338-670, gnl|monDom2|scaffold_1 (146740515-146740269) | |
| 338-670, gnl|oryCun1|scaffold_97202 (2865-3075) | |
| 338-670, gnl|panTro1|chr12 (29962701-29962947) | |
| 338-670, gnl|rheMac2|chr13 (28865022-28865268) | |
| 338-670, gnl|rn3|chr6 (24008964-24008771) | |
| 338-670, gnl|tetNig1|chr10 (1495876-1495631) | |
| 338-670, gnl|xenTro1|scaffold_178 (1376076-1376325) | |
| 766-966, gnl|bosTau2|chr11 (50294150-50293950) | |
| 766-966, gnl|Hg17|chr2 (28995827-28995627) | |
| 766-966, gnl|Mm7|chr17 (69875527-69875332) | |
| 1039-1275, gnl|bosTau2|chr11 (50289362-50289126) | |
| 1039-1275, gnl|Hg17|chr2 (28985827-28985591) | |
| 1039-1275, gnl|Mm7|chr17 (69871569-69871371) | |
| 1355-1620, gnl|bosTau2|chr11 (50288255-50287992) | |
| 1355-1620, gnl|canFam2|chr17 (25845405-25845633) | |
| 1355-1620, gnl|dasNov1|scaffold_77847 (7338-7112) | |
| 1355-1620, gnl|echTel1|scaffold_101894 (1641-1426) | |
| 1355-1620, gnl|galGal2|chr3 (8549120-8549322) | |
| 1355-1620, gnl|hg17|chr2 (28984476-28984697) | |
| 1355-1620, gnl|Hg17|chr2 (28984760-28984496) | |
| 1355-1620, gnl|loxAfr1|scaffold_2968 (100490-100717) | |
| 1355-1620, gnl|mm7|chr17 (69870071-69870298) | |
| 1355-1620, gnl|Mm7|chr17 (69870380-69870090) | |
| 1355-1620, gnl|monDom2|scaffold_1 (146754011-146753766) | |
| 1355-1620, gnl|oryCun1|scaffold_204864 (58780-59007) | |
| 1355-1620, gnl|panTro1|chr12 (29943099-29943322) | |
| 1355-1620, gnl|rheMac2|chr13 (28844745-28844966) | |
| 1355-1620, gnl|rn3|chr6 (24020054-24019810) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 338-670, gnl|bosTau2|chr11 (50300490-50300158) | |
| 338-670, gnl|canFam2|chr17 (25859714-25859960) | |
| 338-670, gnl|echTel1|scaffold_260553 (828-582) | |
| 338-670, gnl|fr1|chrUn (54119144-54118892) | |
| 338-670, gnl|galGal2|chr3 (8554857-8555102) | |
| 338-670, gnl|hg17|chr2 (29004090-29004336) | |
| 338-670, gnl|Hg17|chr2 (29004422-29004090) | |
| 338-670, gnl|loxAfr1|scaffold_2968 (117499-117748) | |
| 338-670, gnl|mm7|chr17 (69879439-69879681) | |
| 338-670, gnl|Mm7|chr17 (69879760-69879439) | |
| 338-670, gnl|monDom2|scaffold_1 (146740515-146740269) | |
| 338-670, gnl|oryCun1|scaffold_97202 (2865-3075) | |
| 338-670, gnl|panTro1|chr12 (29962701-29962947) | |
| 338-670, gnl|rheMac2|chr13 (28865022-28865268) | |
| 338-670, gnl|rn3|chr6 (24008964-24008771) | |
| 338-670, gnl|tetNig1|chr10 (1495876-1495631) | |
| 338-670, gnl|xenTro1|scaffold_178 (1376076-1376325) | |
| 766-966, gnl|bosTau2|chr11 (50294150-50293950) | |
| 766-966, gnl|Hg17|chr2 (28995827-28995627) | |
| 766-966, gnl|Mm7|chr17 (69875527-69875332) | |
| 1039-1275, gnl|bosTau2|chr11 (50289362-50289126) | |
| 1039-1275, gnl|Hg17|chr2 (28985827-28985591) | |
| 1039-1275, gnl|Mm7|chr17 (69871569-69871371) | |
| 1355-1620, gnl|bosTau2|chr11 (50288255-50287992) | |
| 1355-1620, gnl|canFam2|chr17 (25845405-25845633) | |
| 1355-1620, gnl|dasNov1|scaffold_77847 (7338-7112) | |
| 1355-1620, gnl|echTel1|scaffold_101894 (1641-1426) | |
| 1355-1620, gnl|galGal2|chr3 (8549120-8549322) | |
| 1355-1620, gnl|hg17|chr2 (28984476-28984697) | |
| 1355-1620, gnl|Hg17|chr2 (28984760-28984496) | |
| 1355-1620, gnl|loxAfr1|scaffold_2968 (100490-100717) | |
| 1355-1620, gnl|mm7|chr17 (69870071-69870298) | |
| 1355-1620, gnl|Mm7|chr17 (69870380-69870090) | |
| 1355-1620, gnl|monDom2|scaffold_1 (146754011-146753766) | |
| 1355-1620, gnl|oryCun1|scaffold_204864 (58780-59007) | |
| 1355-1620, gnl|panTro1|chr12 (29943099-29943322) | |
| 1355-1620, gnl|rheMac2|chr13 (28844745-28844966) | |
| 1355-1620, gnl|rn3|chr6 (24020054-24019810) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| lyg (0.266205) | |
| cbl (0.229595) | |
| gul (0.177588) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ret (0.128733) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lyg (0.266205) | |
| cbl (0.229595) | |
| gul (0.177588) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ret (0.128733) |