Non-Coding RNA Search

Ss1.1-Pig4-TMW8017O20.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTGTTCACCAAATTTATTGGACATTCAGAACACTAGATTATGAC
GGATTAAAAAGAAAGCACCCAAAATTGCTACACATTAATACCTGAGCAGAGACTGAAGGC
AAATATTTATCTATTAAAACCTATACCATAATGCTGAAACATAGATGAAAAACATTCACA
ACACTCTACAGAGTACAATAAATAGCACTTTTTGTGAATTACAACCAGTTAAATGTAGTA
ATGTTAATTATATCATACAAAAAACACACGCAAAATTACACAAATGTATTTAGTATACCA
TACATTGTACAAAGTACTGGAGAAGTTCATGCATGTTTAAATGGAAAAATCTGCAAGGTG
ACAATCATTTTTCAGTATATACTATAGGACAAGTTCCTTTGCACTGTCAGGTACTGTTAC
TATGCACTGAATTTTCTGGATGAGAACAAAATTATCGATTTGCAAATAAATGATTACTGA
ATCTACCTCAGCATAACACAGAGTATGTCCTCTATAAACTTTTAACTATAATATAGAAAC
TGATCCAGGTTGACAGCCATGTAGTTTATTACATACCCTTGCCCAGACTATTTCCACCTC
AATTTGACCATGCTTTAAGGAAAGACATGTTTTCTTTCTACATACTTTTAGAGAAACCTA
TACTTTTGTCTTTTATGGGAGGTACTGAAGGTAAAATGAGAAGAAAGAAATGTGCTGAGT
TTATGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGG
GCCTTTTAAAATTTTCCGGGGGGGGGCCCAATTTCCCCCCCCCCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTGTTCACCAAATTTATTGGACATTCAGAACACTAGATTATGAC
GGATTAAAAAGAAAGCACCCAAAATTGCTACACATTAATACCTGAGCAGAGACTGAAGGC
AAATATTTATCTATTAAAACCTATACCATAATGCTGAAACATAGATGAAAAACATTCACA
ACACTCTACAGAGTACAATAAATAGCACTTTTTGTGAATTACAACCAGTTAAATGTAGTA
ATGTTAATTATATCATACAAAAAACACACGCAAAATTACACAAATGTATTTAGTATACCA
TACATTGTACAAAGTACTGGAGAAGTTCATGCATGTTTAAATGGAAAAATCTGCAAGGTG
ACAATCATTTTTCAGTATATACTATAGGACAAGTTCCTTTGCACTGTCAGGTACTGTTAC
TATGCACTGAATTTTCTGGATGAGAACAAAATTATCGATTTGCAAATAAATGATTACTGA
ATCTACCTCAGCATAACACAGAGTATGTCCTCTATAAACTTTTAACTATAATATAGAAAC
TGATCCAGGTTGACAGCCATGTAGTTTATTACATACCCTTGCCCAGACTATTTCCACCTC
AATTTGACCATGCTTTAAGGAAAGACATGTTTTCTTTCTACATACTTTTAGAGAAACCTA
TACTTTTGTCTTTTATGGGAGGTACTGAAGGTAAAATGAGAAGAAAGAAATGTGCTGAGT
TTATGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGG
GCCTTTTAAAATTTTCCGGGGGGGGGCCCAATTTCCCCCCCCCCCTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               14-757, gnl|bosTau2|chr2 (53633997-53634741)
               

               
               14-757, gnl|Hg17|chr2 (197523236-197523978)
               

               
               14-757, gnl|Mm7|chr1 (54705705-54706424)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-757, gnl|bosTau2|chr2 (53633997-53634741)
               

               
               14-757, gnl|Hg17|chr2 (197523236-197523978)
               

               
               14-757, gnl|Mm7|chr1 (54705705-54706424)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)

	14-757, gnl\|bosTau2\|chr2 (53633997-53634741)
	14-757, gnl\|Hg17\|chr2 (197523236-197523978)
	14-757, gnl\|Mm7\|chr1 (54705705-54706424)

	lin (0.291206)
	fce (0.271592)
	fbs (0.175346)
	sin (0.174948)
	isp (0.150376)
	hyp (0.142837)
	ret (0.128733)
	ecc (0.115035)