Ss1.1-Pig4-TMW8017P06.3
|
CCAGGGAGCTGCAGGGAGCGTAGGCTGGGCTGTCGTGATGCTGCTCTTCTGCCCAGGCTG
CGGGAACGGGCTGATTGTGGAGGAGGGTCAGCGCTGCCACCGCTTCGCCTGCAACACCTG
CCCCTATGTGCACAACATCACCCGCAAGGTAACGAATCGGAAGTACCCAAAGCTGAAAGA
AGTGGATGACGTGCTTGGTGGAGCAGCTGCCTGGGAGAACGTCGACTCCACCGCAGAGCC
GTGTCCCAAGTGTGAGCATCCTCGGGCCTATTTCATGCAGCTCCAGACCCGCTCTGCCGA
CGAGCCCATGACCACCTTCTACAAGTGCTGCAATGCTCAGTGTGGACACCGCTGGAGGGA
CTAGGGCCGGGTGGCCCCGCTGCCCAGCATCTGCTCACCTCATTCCCCAGGGCGGATTCC
CAGCTGGAAGGGAACTGCGGGTTCTGAGCATCTTTGCCGGTGTGGCAGAAAGCCAGCCTT
CTCAGAGTGGCCCGGCCGGGGGGCCAGGAGATGGCCCCCATCGCCCAGGCAGTGGATGAA
TTTGCTGACGTCCAGGGAGAACTTGTGTTTGGGGGCAGTGGCCACACCAAGTGCGTCTTA
TTTAGGGTCCTGTTATCCATCTTTCCCGTTTAGTGGGCAGTGAGCTTTCTCTCGCCACCA
GCTGACGCTCGTAAACATTTATTTATATGTTGGCACACCCAAGAAAATGGGGCTTTGACT
TAGAACACTAGCTGTCCTTAAGTATTTAGCTGTTAGTTGCAAACTCGGTGGATCAGCGTT
TATTCTGAATATTTACTTAAAATTAAAATCCGATACCACCTTCTCAGGGTTTTAAATGCC
TTAAGGTGGAGACGCCAAATCCCAAAACAAGAATCCAAAACTGACTCCTGTGTGTAGGAC
TAGTGTGGTTATGACATTGTCAATGGCGTGGATTTTCTTTTATTATTTTGATTCTCAATT
CCTGGGATTGCGGTAAACTTAGGAGATGGTATTTCTTTGATACTTGATGCTTTGTCCATC
TCTCTCCTCTAAAGGGGAAAAGGACACCTGAGGGCCAGCAGGGGGCAGGATCTTGGTTAT
TGATGGATTGAATTCTTGCTCAGGACCTCAGATGTCATTGCTTTTCCAGATCTTTCTCTC
TCTCCTTTGAAATTCGTTTTATTAAACTCTAGTTGATTTAAAAAAAAAAAAAAAAAAAAA
CTGTACAACAAAGTGATTGAATTATATTCTTTTTCG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCAGGGAGCTGCAGGGAGCGTAGGCTGGGCTGTCGTGATGCTGCTCTTCTGCCCAGGCTG
CGGGAACGGGCTGATTGTGGAGGAGGGTCAGCGCTGCCACCGCTTCGCCTGCAACACCTG
CCCCTATGTGCACAACATCACCCGCAAGGTAACGAATCGGAAGTACCCAAAGCTGAAAGA
AGTGGATGACGTGCTTGGTGGAGCAGCTGCCTGGGAGAACGTCGACTCCACCGCAGAGCC
GTGTCCCAAGTGTGAGCATCCTCGGGCCTATTTCATGCAGCTCCAGACCCGCTCTGCCGA
CGAGCCCATGACCACCTTCTACAAGTGCTGCAATGCTCAGTGTGGACACCGCTGGAGGGA
CTAGGGCCGGGTGGCCCCGCTGCCCAGCATCTGCTCACCTCATTCCCCAGGGCGGATTCC
CAGCTGGAAGGGAACTGCGGGTTCTGAGCATCTTTGCCGGTGTGGCAGAAAGCCAGCCTT
CTCAGAGTGGCCCGGCCGGGGGGCCAGGAGATGGCCCCCATCGCCCAGGCAGTGGATGAA
TTTGCTGACGTCCAGGGAGAACTTGTGTTTGGGGGCAGTGGCCACACCAAGTGCGTCTTA
TTTAGGGTCCTGTTATCCATCTTTCCCGTTTAGTGGGCAGTGAGCTTTCTCTCGCCACCA
GCTGACGCTCGTAAACATTTATTTATATGTTGGCACACCCAAGAAAATGGGGCTTTGACT
TAGAACACTAGCTGTCCTTAAGTATTTAGCTGTTAGTTGCAAACTCGGTGGATCAGCGTT
TATTCTGAATATTTACTTAAAATTAAAATCCGATACCACCTTCTCAGGGTTTTAAATGCC
TTAAGGTGGAGACGCCAAATCCCAAAACAAGAATCCAAAACTGACTCCTGTGTGTAGGAC
TAGTGTGGTTATGACATTGTCAATGGCGTGGATTTTCTTTTATTATTTTGATTCTCAATT
CCTGGGATTGCGGTAAACTTAGGAGATGGTATTTCTTTGATACTTGATGCTTTGTCCATC
TCTCTCCTCTAAAGGGGAAAAGGACACCTGAGGGCCAGCAGGGGGCAGGATCTTGGTTAT
TGATGGATTGAATTCTTGCTCAGGACCTCAGATGTCATTGCTTTTCCAGATCTTTCTCTC
TCTCCTTTGAAATTCGTTTTATTAAACTCTAGTTGATTTAAAAAAAAAAAAAAAAAAAAA
CTGTACAACAAAGTGATTGAATTATATTCTTTTTCG
|
|
gi|13385394|ref|NP_080177.1| |
Protein identifier
|
gi|13385394|ref|NP_080177.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
4-150, gnl|bosTau2|chr25 (2533553-2533407) |
|
4-150, gnl|canFam2|chr6 (43478283-43478164) |
|
4-150, gnl|danRer3|chr3 (41466217-41466098) |
|
4-150, gnl|dasNov1|scaffold_79400 (2795-2903) |
|
4-150, gnl|echTel1|scaffold_303117 (11509-11650) |
|
4-150, gnl|fr1|chrUn (67591113-67590994) |
|
4-150, gnl|hg17|chr16 (43475-43596) |
|
4-150, gnl|Hg17|chr16 (43625-43474) |
|
4-150, gnl|loxAfr1|scaffold_16320 (26859-27000) |
|
4-150, gnl|mm7|chr11 (32157147-32157247) |
|
4-150, gnl|Mm7|chr11 (32157285-32157146) |
|
4-150, gnl|monDom2|scaffold_49 (7904280-7904402) |
|
4-150, gnl|oryCun1|scaffold_95077 (6211-6087) |
|
4-150, gnl|panTro1|chr18 (46414-46541) |
|
4-150, gnl|rheMac2|chr20 (9682-9803) |
|
4-150, gnl|rn3|chr10 (15672292-15672135) |
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4-150, gnl|tetNig1|chr3 (11797061-11797174) |
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4-150, gnl|xenTro1|scaffold_1091 (272569-272704) |
| |
|
234-1137, gnl|bosTau2|chr25 (2531405-2530494) |
|
234-1137, gnl|Hg17|chr16 (37560-36729) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
4-150, gnl|bosTau2|chr25 (2533553-2533407) |
|
4-150, gnl|canFam2|chr6 (43478283-43478164) |
|
4-150, gnl|danRer3|chr3 (41466217-41466098) |
|
4-150, gnl|dasNov1|scaffold_79400 (2795-2903) |
|
4-150, gnl|echTel1|scaffold_303117 (11509-11650) |
|
4-150, gnl|fr1|chrUn (67591113-67590994) |
|
4-150, gnl|hg17|chr16 (43475-43596) |
|
4-150, gnl|Hg17|chr16 (43625-43474) |
|
4-150, gnl|loxAfr1|scaffold_16320 (26859-27000) |
|
4-150, gnl|mm7|chr11 (32157147-32157247) |
|
4-150, gnl|Mm7|chr11 (32157285-32157146) |
|
4-150, gnl|monDom2|scaffold_49 (7904280-7904402) |
|
4-150, gnl|oryCun1|scaffold_95077 (6211-6087) |
|
4-150, gnl|panTro1|chr18 (46414-46541) |
|
4-150, gnl|rheMac2|chr20 (9682-9803) |
|
4-150, gnl|rn3|chr10 (15672292-15672135) |
|
4-150, gnl|tetNig1|chr3 (11797061-11797174) |
|
4-150, gnl|xenTro1|scaffold_1091 (272569-272704) |
| |
|
234-1137, gnl|bosTau2|chr25 (2531405-2530494) |
|
234-1137, gnl|Hg17|chr16 (37560-36729) |
|
bla (0.746083) |
|
vin (0.665115) |
|
cte (0.58548) |
|
pro (0.512033) |
|
csk (0.422238) |
|
cmu (0.372787) |
|
cli (0.305623) |
|
fat (0.294855) |
|
eru (0.240096) |
|
cbe (0.239234) |
|
mgp (0.230681) |
|
tes (0.207814) |
|
hea (0.204499) |
|
col (0.195008) |
|
nlu (0.191681) |
|
sto (0.179824) |
|
fty (0.17584) |
|
sin (0.174948) |
|
rec (0.17307) |
|
cki (0.165235) |
|
mga (0.160205) |
|
bfe (0.149858) |
|
liv (0.146284) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
pla (0.133672) |
|
ova (0.129132) |
|
sug (0.127291) |
|
pgl (0.118483) |
|
med (0.116252) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
bla (0.746083) |
|
vin (0.665115) |
|
cte (0.58548) |
|
pro (0.512033) |
|
csk (0.422238) |
|
cmu (0.372787) |
|
cli (0.305623) |
|
fat (0.294855) |
|
eru (0.240096) |
|
cbe (0.239234) |
|
mgp (0.230681) |
|
tes (0.207814) |
|
hea (0.204499) |
|
col (0.195008) |
|
nlu (0.191681) |
|
sto (0.179824) |
|
fty (0.17584) |
|
sin (0.174948) |
|
rec (0.17307) |
|
cki (0.165235) |
|
mga (0.160205) |
|
bfe (0.149858) |
|
liv (0.146284) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
pla (0.133672) |
|
ova (0.129132) |
|
sug (0.127291) |
|
pgl (0.118483) |
|
med (0.116252) |
|
jej (0.0989218) |
|
eje (0.0988338) |
