Non-Coding RNA Search

Ss1.1-Pig4-TMW8017P07.5

Sequence:


               
               GCACTCAAACAGCATATGGAGGTTCCCAGGCTAGAGGTCCAGTCAGAGCTGTAGCTGCCA
GCCTACGCCACAGCAACTCAGGATCTGAGCCTCATCTGCGACCTCCACCATGGCTCACAG
CAACACCAGATCCTTAGCCAACTGAGTGAGGCCAGGGATAGAACTTCACGGTTACTAGTC
AGGTTCACTAACCACTGAGCCACGATGGGAACTCCAACTCCATAAGGAAAATGTCAAGGT
GTCTCAGAACCTCACAGCCTTTTTATTAACTTTAGCACTCTGCACATCGTGCTGCCACGA
GAGGCTTCATCCGATATGGCTGGCGCTGGAGTTGGAGAACAACCCTGTTTGTGACTATAT
TCAACACAGTGAATACTGGTCTAAATGTGTACCGAAATAAAAATGCCCTGAGCCATTTTG
TCATTGCAGGAGCTGTCACAGGAAGTCTTTTTAGAATAAACTTAGGCCTACATGGCCTGG
TAGCTGGTGGCCTAATTGGAGCCTTGCTAGGCACTCCTATAGGAAGCCTGTTGATGGCAA
TTCAGAAGTACTGTGGTGAGACGGTTCAGGAAAGAAAAGCGAAGGATCGAAAAGCACTCC
AGGAGCTGAAATTGGAAGAGCGGAAAGCCAGACTACAATTTACTGAGCTCCTCCCTGAAG
AAATTGAAAGCAGTTTACAGAAAAATCAATCCAAGGATGATGCTATGAAAATTGAAACAC
TGCTGAATCTTCCTAGAAACCCTTCATCAACAAATAAACAAGACTAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACTCAAACAGCATATGGAGGTTCCCAGGCTAGAGGTCCAGTCAGAGCTGTAGCTGCCA
GCCTACGCCACAGCAACTCAGGATCTGAGCCTCATCTGCGACCTCCACCATGGCTCACAG
CAACACCAGATCCTTAGCCAACTGAGTGAGGCCAGGGATAGAACTTCACGGTTACTAGTC
AGGTTCACTAACCACTGAGCCACGATGGGAACTCCAACTCCATAAGGAAAATGTCAAGGT
GTCTCAGAACCTCACAGCCTTTTTATTAACTTTAGCACTCTGCACATCGTGCTGCCACGA
GAGGCTTCATCCGATATGGCTGGCGCTGGAGTTGGAGAACAACCCTGTTTGTGACTATAT
TCAACACAGTGAATACTGGTCTAAATGTGTACCGAAATAAAAATGCCCTGAGCCATTTTG
TCATTGCAGGAGCTGTCACAGGAAGTCTTTTTAGAATAAACTTAGGCCTACATGGCCTGG
TAGCTGGTGGCCTAATTGGAGCCTTGCTAGGCACTCCTATAGGAAGCCTGTTGATGGCAA
TTCAGAAGTACTGTGGTGAGACGGTTCAGGAAAGAAAAGCGAAGGATCGAAAAGCACTCC
AGGAGCTGAAATTGGAAGAGCGGAAAGCCAGACTACAATTTACTGAGCTCCTCCCTGAAG
AAATTGAAAGCAGTTTACAGAAAAATCAATCCAAGGATGATGCTATGAAAATTGAAACAC
TGCTGAATCTTCCTAGAAACCCTTCATCAACAAATAAACAAGACTAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9368544|emb|CAB98251.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9368544|emb|CAB98251.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               222-364, gnl|bosTau2|chr1 (41229317-41229459)
               

               
               222-364, gnl|Hg17|chr3 (120705015-120705157)
               

               
               222-364, gnl|Mm7|chr16 (38218507-38218360)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               222-364, gnl|bosTau2|chr1 (41229317-41229459)
               

               
               222-364, gnl|Hg17|chr3 (120705015-120705157)
               

               
               222-364, gnl|Mm7|chr16 (38218507-38218360)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cte (0.29274)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               cut (0.169924)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               cut (0.169924)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	222-364, gnl\|bosTau2\|chr1 (41229317-41229459)
	222-364, gnl\|Hg17\|chr3 (120705015-120705157)
	222-364, gnl\|Mm7\|chr16 (38218507-38218360)

	cte (0.29274)
	fcc (0.197785)
	nlu (0.191681)
	cut (0.169924)
	kid (0.129735)
	sug (0.127291)
	cly (0.120642)
	ebs (0.118301)
	eje (0.0988338)