Non-Coding RNA Search

Ss1.1-Pig4-TMW8018A03.5

Sequence:


               
               GGGGCTGGCAGCCCCTCGCCCACCAGCGCCTCCCCTCACCGACTTTGGCCTTTCTAGCAG
CAGACACAAGGACCAGGCTCCGGCGGCGGCGGGGGTCACATACGGGTTCCCTCACGCCTG
CCAGCCGCCCGCCCGCCCGGCGCAGATGCACGCGGCCCGTGTATGTACATAGACGTTACG
GCAGCCGAGGTTTTTAATGAGATTCTTTCTATGGGCTTTACCCCTCCCCCAGAACCTCCT
TTTTTACTTCCAATGCTAGCTGTGACCCCTGTACATGTCTCTGTTTATTCACTTGGTTAT
GATTTGTATTTTCTGGTTTTTTGTTTGTTTTTGTTTTTTTGGTTTTTAATTTATAACAGT
CCCACTCACCTCTATTTATTCATTTTTGGGAAAACCCGACCTCCCGCACCCCCCAGCCAT
CCCGCCCCTCCAGGGACCGCCCGTCCCCGGGCTCTCCCTGCGCCCCAGTGTGTGTCCGGG
CCCGGCCTGTCCGTCTCCGCCCGCCCGCGGCTCCAGCCGGGTTCTCATGGTGCTCAAACC
CGCTCCCCTCCCCGACGTCCTGCACTTTCTCGGACCAGCCCCCTACTCCCGACCCGCCCC
CAACCCCGCCCGAGGGTGAGCGACTCCTGTACTGTAGGGAAGAAGTGGGAACTGAAATGG
TATTTCGTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCTGGCAGCCCCTCGCCCACCAGCGCCTCCCCTCACCGACTTTGGCCTTTCTAGCAG
CAGACACAAGGACCAGGCTCCGGCGGCGGCGGGGGTCACATACGGGTTCCCTCACGCCTG
CCAGCCGCCCGCCCGCCCGGCGCAGATGCACGCGGCCCGTGTATGTACATAGACGTTACG
GCAGCCGAGGTTTTTAATGAGATTCTTTCTATGGGCTTTACCCCTCCCCCAGAACCTCCT
TTTTTACTTCCAATGCTAGCTGTGACCCCTGTACATGTCTCTGTTTATTCACTTGGTTAT
GATTTGTATTTTCTGGTTTTTTGTTTGTTTTTGTTTTTTTGGTTTTTAATTTATAACAGT
CCCACTCACCTCTATTTATTCATTTTTGGGAAAACCCGACCTCCCGCACCCCCCAGCCAT
CCCGCCCCTCCAGGGACCGCCCGTCCCCGGGCTCTCCCTGCGCCCCAGTGTGTGTCCGGG
CCCGGCCTGTCCGTCTCCGCCCGCCCGCGGCTCCAGCCGGGTTCTCATGGTGCTCAAACC
CGCTCCCCTCCCCGACGTCCTGCACTTTCTCGGACCAGCCCCCTACTCCCGACCCGCCCC
CAACCCCGCCCGAGGGTGAGCGACTCCTGTACTGTAGGGAAGAAGTGGGAACTGAAATGG
TATTTCGTAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               366-466, - strand, RNAz p=0.999266

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               366-466, - strand, RNAz p=0.999266

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               418-532, - strand, RNAmicro p=0.921328

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               418-532, - strand, RNAmicro p=0.921328

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-672, gnl|bosTau2|chr19 (15379694-15378995)
               

               
               1-672, gnl|Hg17|chr17 (7697784-7698454)
               

               
               1-672, gnl|Mm7|chr11 (69481181-69480472)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-672, gnl|bosTau2|chr19 (15379694-15378995)
               

               
               1-672, gnl|Hg17|chr17 (7697784-7698454)
               

               
               1-672, gnl|Mm7|chr11 (69481181-69480472)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nep (0.183925)
               

               
               duo (0.172801)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               duo (0.172801)

	1-672, gnl\|bosTau2\|chr19 (15379694-15378995)
	1-672, gnl\|Hg17\|chr17 (7697784-7698454)
	1-672, gnl\|Mm7\|chr11 (69481181-69480472)