Non-Coding RNA Search

Ss1.1-Pig4-TMW8018A06.5

Sequence:


               
               ATCATCTTCTTTCTCAAAAAAAAAAAAAAATTACACTTTGGAATTTACAGAAGTAGAACC
AGGAAGTCACAAAATTTTTGAGTTAAGGTTAGAAAGATAGTTATAATTAACATAATTTCT
CAGTGAATAAAGTTGTAGTTCTCATATTAAATAGGCAAGTTTACATGCTGGTGTTTAGAG
AATGGCTAAAAAATTAAAAACCATGTTGCATTAATCTGTTTTCAGTCATACCATTTTCAG
AGTTCTATGTAAGGTGGCGTTTTGTTTTCTTTTTAGGGATAGTTTGTGATAGTAATAACT
GTCCCTTATGTTAGTGAATTACACATGTACAAATCGAAACTGTAAATTGTGAACACTGGA
AAGTACCATTGTGACATAGAGTTAAACATCTTAGTAATATATTAAAATGAATGTAAATGG
AGGTTAAAATTACGTTACTGTGAAACTCATCTTCCAACTCTAAGTTAAGCTTTGGCGATT
TGTATTAGTGGATTACTGTTCAGAGCTTTGAAAACACTGCACATTTCTGTACAAGCCAGA
ATTATCATTTCTTTGTAACTTATTATTCAGCTTGGCAATTGCTTTTGATTTGGTGGATTG
ATAACATGATATATATTTAAGCAGTTTGAAACTATTCATTTCTACACACTATTTTTTAAA
ATCATCTACTAAATGAAACATACAATAAAACTACCTGTGCTGAAATTTGGGGGAAGTTTA
GGTCCTTTAAAAAAGAGTATTAATAATCATTGACTACATCTATGATGAAAGTGCTTATTT
TGGTTTACTTAGATAATGCTGCAGTTGGTGGAAATGATAAGCATTTAAAGTGTTAATATT
CTGTGAATGCATTGGATTTAAGAATAAACATTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCATCTTCTTTCTCAAAAAAAAAAAAAAATTACACTTTGGAATTTACAGAAGTAGAACC
AGGAAGTCACAAAATTTTTGAGTTAAGGTTAGAAAGATAGTTATAATTAACATAATTTCT
CAGTGAATAAAGTTGTAGTTCTCATATTAAATAGGCAAGTTTACATGCTGGTGTTTAGAG
AATGGCTAAAAAATTAAAAACCATGTTGCATTAATCTGTTTTCAGTCATACCATTTTCAG
AGTTCTATGTAAGGTGGCGTTTTGTTTTCTTTTTAGGGATAGTTTGTGATAGTAATAACT
GTCCCTTATGTTAGTGAATTACACATGTACAAATCGAAACTGTAAATTGTGAACACTGGA
AAGTACCATTGTGACATAGAGTTAAACATCTTAGTAATATATTAAAATGAATGTAAATGG
AGGTTAAAATTACGTTACTGTGAAACTCATCTTCCAACTCTAAGTTAAGCTTTGGCGATT
TGTATTAGTGGATTACTGTTCAGAGCTTTGAAAACACTGCACATTTCTGTACAAGCCAGA
ATTATCATTTCTTTGTAACTTATTATTCAGCTTGGCAATTGCTTTTGATTTGGTGGATTG
ATAACATGATATATATTTAAGCAGTTTGAAACTATTCATTTCTACACACTATTTTTTAAA
ATCATCTACTAAATGAAACATACAATAAAACTACCTGTGCTGAAATTTGGGGGAAGTTTA
GGTCCTTTAAAAAAGAGTATTAATAATCATTGACTACATCTATGATGAAAGTGCTTATTT
TGGTTTACTTAGATAATGCTGCAGTTGGTGGAAATGATAAGCATTTAAAGTGTTAATATT
CTGTGAATGCATTGGATTTAAGAATAAACATTTTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               268-386, - strand, RNAz p=0.800371

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-386, - strand, RNAz p=0.800371

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               7-876, gnl|bosTau2|chr5 (22753472-22752619)
               

               
               7-876, gnl|Hg17|chr12 (49157138-49158018)
               

               
               7-876, gnl|Mm7|chr15 (99998749-99999587)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-876, gnl|bosTau2|chr5 (22753472-22752619)
               

               
               7-876, gnl|Hg17|chr12 (49157138-49158018)
               

               
               7-876, gnl|Mm7|chr15 (99998749-99999587)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	7-876, gnl\|bosTau2\|chr5 (22753472-22752619)
	7-876, gnl\|Hg17\|chr12 (49157138-49158018)
	7-876, gnl\|Mm7\|chr15 (99998749-99999587)

	sin (0.174948)
	duo (0.172801)
	fco (0.157208)
	tbr (0.154178)
	bfe (0.149858)
	hlv (0.139256)
	ret (0.128733)
	tra (0.123092)