Non-Coding RNA Search

Ss1.1-Pig4-TMW8018A19.5

Sequence:


               
               GAGACTGGGGTGGGCATAGGGAGCAGCTCTCGTGCCCTCGCGAGAGGACGGAAAGGGCGC
AGGGTTTGAAACATGGCGGACGACGTGGACCAGCAACAAACTACCAACACTGTAGAAGAG
CCCCTGGATCTCATCAGACTCAGCCTGGATGAGCGAATCTATGTGAAAATGAGAAATGAC
AGAGAGCTTCGAGGCAGGTTACATGCGTATGATCAGCACTTAAATATGATATTGGGAGAT
GTGGAAGAAACTGTGACAACTATAGAAATTGATGAAGAAACATATGAAGAGATATATAAA
TCAACAAAACGGAATATTCCAATGCTCTTTGTCCGGGGAGATGGCGTTGTGCTAGTTGCC
CCACCGTTGAGAGTTGGCTGAAACAAAGAATTTATCCTGTGTGGAAATGGGAGATGTTGT
GTGTTGCCTCTTTAAATGTAGAAGACACCCAAAAGAGAAACCTGCGTACATTTTGATATT
AAGAAATAACCAAGAATTCTTCCACTCCTGAAATAAGTTGATTTGCAGATAACTCAGAAA
TTCTTGAGCTAAACAGCATTTTTATTTTTCTCTAACTCATCCAATAAATGTGATCACCAA
GATGCAGAACTTTTTCAGGAGTTGATTTGCTCCATTGTTTTTCAGACAATTTCTGGGAGT
TTTTTTTTTTTTTTTCCTTAAATTAAATTTGACATTTCCTTTTTTTGATTTTTAATGCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGACTGGGGTGGGCATAGGGAGCAGCTCTCGTGCCCTCGCGAGAGGACGGAAAGGGCGC
AGGGTTTGAAACATGGCGGACGACGTGGACCAGCAACAAACTACCAACACTGTAGAAGAG
CCCCTGGATCTCATCAGACTCAGCCTGGATGAGCGAATCTATGTGAAAATGAGAAATGAC
AGAGAGCTTCGAGGCAGGTTACATGCGTATGATCAGCACTTAAATATGATATTGGGAGAT
GTGGAAGAAACTGTGACAACTATAGAAATTGATGAAGAAACATATGAAGAGATATATAAA
TCAACAAAACGGAATATTCCAATGCTCTTTGTCCGGGGAGATGGCGTTGTGCTAGTTGCC
CCACCGTTGAGAGTTGGCTGAAACAAAGAATTTATCCTGTGTGGAAATGGGAGATGTTGT
GTGTTGCCTCTTTAAATGTAGAAGACACCCAAAAGAGAAACCTGCGTACATTTTGATATT
AAGAAATAACCAAGAATTCTTCCACTCCTGAAATAAGTTGATTTGCAGATAACTCAGAAA
TTCTTGAGCTAAACAGCATTTTTATTTTTCTCTAACTCATCCAATAAATGTGATCACCAA
GATGCAGAACTTTTTCAGGAGTTGATTTGCTCCATTGTTTTTCAGACAATTTCTGGGAGT
TTTTTTTTTTTTTTTCCTTAAATTAAATTTGACATTTCCTTTTTTTGATTTTTAATGCGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6IAH0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IAH0_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               597-713, + strand, RNAz p=0.724227

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               597-713, + strand, RNAz p=0.724227

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               61-713, gnl|bosTau2|chr12 (12967689-12968323)
               

               
               61-713, gnl|Hg17|chr12 (93487053-93487684)
               

               
               61-713, gnl|Mm7|chr15 (39412331-39411732)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-713, gnl|bosTau2|chr12 (12967689-12968323)
               

               
               61-713, gnl|Hg17|chr12 (93487053-93487684)
               

               
               61-713, gnl|Mm7|chr15 (39412331-39411732)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               ldo (0.38801)
               

               
               sto (0.359648)
               

               
               fty (0.351679)
               

               
               sme (0.305437)
               

               
               hlv (0.278513)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.38801)
               

               
               sto (0.359648)
               

               
               fty (0.351679)
               

               
               sme (0.305437)
               

               
               hlv (0.278513)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	61-713, gnl\|bosTau2\|chr12 (12967689-12968323)
	61-713, gnl\|Hg17\|chr12 (93487053-93487684)
	61-713, gnl\|Mm7\|chr15 (39412331-39411732)

	ldo (0.38801)
	sto (0.359648)
	fty (0.351679)
	sme (0.305437)
	hlv (0.278513)
	ova (0.258264)
	bla (0.248694)
	nms (0.213858)
	mas (0.210305)
	fli (0.202881)
	col (0.195008)
	nlu (0.191681)
	gul (0.177588)
	duo (0.172801)
	cut (0.169924)
	cki (0.165235)
	fco (0.157208)
	tbr (0.154178)
	lin (0.145603)
	cst (0.140036)
	lyg (0.133103)
	nmm (0.132802)
	ebs (0.118301)
	spc (0.113366)
	eje (0.0988338)