Ss1.1-Pig4-TMW8018A22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGATTTAAACAGTCAAGTTAAATCAAGCTGGGTAATCATGGCAGAAGGTGGATTCGA TCCCTGTGAATGTGTTTGCTCTCATGAACATGCGATGAGAAGGCTGATCAATCTGTTGAG GCAGTCCCAGTCCTACTGCACAGACACAGAATGTCTTCAGGAATTACCAGGACCCTCCAG TGATAATGGCATCAGTATCACCATGATCTTGATGGCCTGGATGGTTATTGCAGTGATCCT GTTTCTATTGAGACCTCCTAATCTAAGAGGATCCAACCTAACCGGAAAGCCAACCAGTCC TCATAATGGACAAGACCCACCAGCCCCTCCTGTGGACTAACTTTGTGACATGGGAAGTGA AAATAGTTAACACCTTGCACGACGACCAAATGAACGAAGATGACCAGAGTACTCTTTACC CTGTTTAGAACTGTTTTTCCTCTTGCATCTGCAATATGGGATGGTATTGTTTTCACGAGC TTCTAGAAATTTCACTTGCGAGCTTATTTTTGCTTCCTGTGTTAACACCTTTCCTATATT TGAGTAAATGACTACATTAAAAAGTTACATGGGGCTTTTTTGGTTATCCTAAACGTACAC ATTCCATTCATTCTCTTTGTAAATGTGATCATCCTTTTTGTGATAATTTCTGGCCTGATT GAAGGAAATCTGAGATCTCTGCATTTAAATATTTTAAATAGTTTTGATGGGTTTAAAAGT TTTTATAAGGTATTTATAAAGTTATTTGGGGTTATCTGAGATTGTATGAAAGAAAATTAG AACCACACTGTATTTACACTTACCTTGGTAGTTTATTTGTGGGTGGCAGTCTTCTCTAGT TCTTGGGACTGTGACAGCCTTGAGAATATTTTACACGTTACAGCTGAAATCTGTGTCATC CACTACAACTGGCTTATGTGGCTAGAAAAGGAGGAAAGAAGAAATGAAATAATTGTTTAC TAAGTTTTTTATTCCCTTACAAATACCTAATATTAAGAAAACTTTAAATAAATATGATTT AAATGTGGTGGACAATTTATAGTCCATTGTATGACATTTGTAAGCCACTGTACACTAGCC TTACATGGTTCATGAAGAGGAAAAAATGTAATTCTTTCTGCCTTTGCCAGGTATAATCTA TACAGTAATAATTTAAGCTATAATTTATTGTTTAAAATAGGTGCCTCTCAGGAAGCTGCT TTTCTGTTGTAACACTTTCCTGTTAAATGAAACTATCTTAAAGCTGTATTGGGGGCCTGT TTGGTTACTGACATTTGAATGCTATTTACTTATTTACTCTGTTATTTTCTTTAAAGAAAA CATTTTGAGTCTTGTTATCTTTCTGACTTTAAAAAAAAATGTTTAATGAATTCTTGGTTT ACTCCAAGGAAAAAGAGGAAAATGAGAAACAATCAAGGATCTTTTCCTTAACCCCTGTCT CATTCTCGTTTAGTAATAGGATGGATTGGGGTGGGGAGGAGCATTAATATAAGTAAAATT TTTGAAATGTATAAAAATGTAAAAAGTTGCATTGTTTTTGTTCAGTTTGAAAGAAAAGGA ATACAAATGGCATAAAAAAAATCTGCATGACCTGTGGGTTATGGAATTTTTGCCTAGCAA GTAATTGCAGATGATTTATGGGGACTAGAAGATATTTTGCTATCAATGTAAGGATTTTTT TCCCCCTAGATAAGTCTAGCTTTTCACTGTATAGATCCAACAAATTACTTGTATGAATTG AATAAACTTCTCTATATCATTGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGATTTAAACAGTCAAGTTAAATCAAGCTGGGTAATCATGGCAGAAGGTGGATTCGA TCCCTGTGAATGTGTTTGCTCTCATGAACATGCGATGAGAAGGCTGATCAATCTGTTGAG GCAGTCCCAGTCCTACTGCACAGACACAGAATGTCTTCAGGAATTACCAGGACCCTCCAG TGATAATGGCATCAGTATCACCATGATCTTGATGGCCTGGATGGTTATTGCAGTGATCCT GTTTCTATTGAGACCTCCTAATCTAAGAGGATCCAACCTAACCGGAAAGCCAACCAGTCC TCATAATGGACAAGACCCACCAGCCCCTCCTGTGGACTAACTTTGTGACATGGGAAGTGA AAATAGTTAACACCTTGCACGACGACCAAATGAACGAAGATGACCAGAGTACTCTTTACC CTGTTTAGAACTGTTTTTCCTCTTGCATCTGCAATATGGGATGGTATTGTTTTCACGAGC TTCTAGAAATTTCACTTGCGAGCTTATTTTTGCTTCCTGTGTTAACACCTTTCCTATATT TGAGTAAATGACTACATTAAAAAGTTACATGGGGCTTTTTTGGTTATCCTAAACGTACAC ATTCCATTCATTCTCTTTGTAAATGTGATCATCCTTTTTGTGATAATTTCTGGCCTGATT GAAGGAAATCTGAGATCTCTGCATTTAAATATTTTAAATAGTTTTGATGGGTTTAAAAGT TTTTATAAGGTATTTATAAAGTTATTTGGGGTTATCTGAGATTGTATGAAAGAAAATTAG AACCACACTGTATTTACACTTACCTTGGTAGTTTATTTGTGGGTGGCAGTCTTCTCTAGT TCTTGGGACTGTGACAGCCTTGAGAATATTTTACACGTTACAGCTGAAATCTGTGTCATC CACTACAACTGGCTTATGTGGCTAGAAAAGGAGGAAAGAAGAAATGAAATAATTGTTTAC TAAGTTTTTTATTCCCTTACAAATACCTAATATTAAGAAAACTTTAAATAAATATGATTT AAATGTGGTGGACAATTTATAGTCCATTGTATGACATTTGTAAGCCACTGTACACTAGCC TTACATGGTTCATGAAGAGGAAAAAATGTAATTCTTTCTGCCTTTGCCAGGTATAATCTA TACAGTAATAATTTAAGCTATAATTTATTGTTTAAAATAGGTGCCTCTCAGGAAGCTGCT TTTCTGTTGTAACACTTTCCTGTTAAATGAAACTATCTTAAAGCTGTATTGGGGGCCTGT TTGGTTACTGACATTTGAATGCTATTTACTTATTTACTCTGTTATTTTCTTTAAAGAAAA CATTTTGAGTCTTGTTATCTTTCTGACTTTAAAAAAAAATGTTTAATGAATTCTTGGTTT ACTCCAAGGAAAAAGAGGAAAATGAGAAACAATCAAGGATCTTTTCCTTAACCCCTGTCT CATTCTCGTTTAGTAATAGGATGGATTGGGGTGGGGAGGAGCATTAATATAAGTAAAATT TTTGAAATGTATAAAAATGTAAAAAGTTGCATTGTTTTTGTTCAGTTTGAAAGAAAAGGA ATACAAATGGCATAAAAAAAATCTGCATGACCTGTGGGTTATGGAATTTTTGCCTAGCAA GTAATTGCAGATGATTTATGGGGACTAGAAGATATTTTGCTATCAATGTAAGGATTTTTT TCCCCCTAGATAAGTCTAGCTTTTCACTGTATAGATCCAACAAATTACTTGTATGAATTG AATAAACTTCTCTATATCATTGTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 5-120, gnl|bosTau2|chr29 (22320837-22320952) | |
| 5-120, gnl|canFam2|chr3 (75703003-75702879) | |
| 5-120, gnl|canFam2|chrX (44338745-44338822) | |
| 5-120, gnl|danRer3|chr1 (21376863-21376726) | |
| 5-120, gnl|dasNov1|scaffold_57627 (5185-5259) | |
| 5-120, gnl|dasNov1|scaffold_57627 (5173-5297) | |
| 5-120, gnl|echTel1|scaffold_180928 (6008-5885) | |
| 5-120, gnl|echTel1|scaffold_312849 (77765-77712) | |
| 5-120, gnl|hg17|chr4 (39429242-39429367) | |
| 5-120, gnl|Hg17|chr4 (39429367-39429252) | |
| 5-120, gnl|hg17|chr7 (30932352-30932422) | |
| 5-120, gnl|loxAfr1|scaffold_13986 (30026-30150) | |
| 5-120, gnl|loxAfr1|scaffold_26 (112722-112662) | |
| 5-120, gnl|mm7|chr5 (64823197-64823313) | |
| 5-120, gnl|Mm7|chr5 (64823313-64823199) | |
| 5-120, gnl|monDom2|scaffold_26 (4679754-4679877) | |
| 5-120, gnl|monDom2|scaffold_8 (32366946-32366880) | |
| 5-120, gnl|oryCun1|scaffold_173468 (5930-6054) | |
| 5-120, gnl|oryCun1|scaffold_92956 (13751-13680) | |
| 5-120, gnl|panTro1|chr3 (42122688-42122813) | |
| 5-120, gnl|panTro1|chr6 (32039231-32039301) | |
| 5-120, gnl|rheMac2|chr3 (95106832-95106758) | |
| 5-120, gnl|rheMac2|chr3 (95106832-95106720) | |
| 5-120, gnl|rn3|chr14 (45506330-45506197) | |
| 5-120, gnl|rn3|chr15 (5222852-5222926) | |
| 305-1764, gnl|bosTau2|chr6 (30677084-30678541) | |
| 305-1764, gnl|Hg17|chr4 (39376344-39374283) | |
| 305-1764, gnl|Mm7|chr5 (64805248-64803981) | |
| 308-1334, gnl|bosTau2|chr29 (22350317-22351343) | |
| 308-1334, gnl|Hg17|chr4 (39376344-39375030) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-120, gnl|bosTau2|chr29 (22320837-22320952) | |
| 5-120, gnl|canFam2|chr3 (75703003-75702879) | |
| 5-120, gnl|canFam2|chrX (44338745-44338822) | |
| 5-120, gnl|danRer3|chr1 (21376863-21376726) | |
| 5-120, gnl|dasNov1|scaffold_57627 (5185-5259) | |
| 5-120, gnl|dasNov1|scaffold_57627 (5173-5297) | |
| 5-120, gnl|echTel1|scaffold_180928 (6008-5885) | |
| 5-120, gnl|echTel1|scaffold_312849 (77765-77712) | |
| 5-120, gnl|hg17|chr4 (39429242-39429367) | |
| 5-120, gnl|Hg17|chr4 (39429367-39429252) | |
| 5-120, gnl|hg17|chr7 (30932352-30932422) | |
| 5-120, gnl|loxAfr1|scaffold_13986 (30026-30150) | |
| 5-120, gnl|loxAfr1|scaffold_26 (112722-112662) | |
| 5-120, gnl|mm7|chr5 (64823197-64823313) | |
| 5-120, gnl|Mm7|chr5 (64823313-64823199) | |
| 5-120, gnl|monDom2|scaffold_26 (4679754-4679877) | |
| 5-120, gnl|monDom2|scaffold_8 (32366946-32366880) | |
| 5-120, gnl|oryCun1|scaffold_173468 (5930-6054) | |
| 5-120, gnl|oryCun1|scaffold_92956 (13751-13680) | |
| 5-120, gnl|panTro1|chr3 (42122688-42122813) | |
| 5-120, gnl|panTro1|chr6 (32039231-32039301) | |
| 5-120, gnl|rheMac2|chr3 (95106832-95106758) | |
| 5-120, gnl|rheMac2|chr3 (95106832-95106720) | |
| 5-120, gnl|rn3|chr14 (45506330-45506197) | |
| 5-120, gnl|rn3|chr15 (5222852-5222926) | |
| 305-1764, gnl|bosTau2|chr6 (30677084-30678541) | |
| 305-1764, gnl|Hg17|chr4 (39376344-39374283) | |
| 305-1764, gnl|Mm7|chr5 (64805248-64803981) | |
| 308-1334, gnl|bosTau2|chr29 (22350317-22351343) | |
| 308-1334, gnl|Hg17|chr4 (39376344-39375030) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| tra (0.492368) | |
| tes (0.415628) | |
| cte (0.29274) | |
| pty (0.285429) | |
| lyg (0.266205) | |
| fty (0.17584) | |
| ton (0.1755) | |
| rec (0.17307) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| cty (0.10408) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.492368) | |
| tes (0.415628) | |
| cte (0.29274) | |
| pty (0.285429) | |
| lyg (0.266205) | |
| fty (0.17584) | |
| ton (0.1755) | |
| rec (0.17307) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| cty (0.10408) |