Non-Coding RNA Search

Ss1.1-Pig4-TMW8018B12.5

Sequence:


               
               TGCCGCTGCCGCCTCCGCGCTCCTGCTCCGCGCTCCGCCCTCGGTACCGCGAGTCCGCCC
CGTCGCCATGGCTGGGCTTGTGGTCAGTGGAACTCAAGTGTCCTACATAGGCCAGGACTG
CAGAGAGATTCCAGAGCACCTCGGCAGGGACTATGGACACTTTGCAAAGAGGCTCGACCT
GAGCTTTAACCTTCTGAGGTCACTGGAAGGACTGAGCGCGTTCGGGAGCCTGGAGGAACT
CATCTTGGACAACAATCTGCTGGGGAACGACCTCGTGTTGCCAGGGTTACCCAGTTTCCA
TACCTTAACCCTCAACAAGAACCAGATCACTGACTTGGAGTGTCTGCTTGATCACCTGGC
AGAAGTGACACCAGCTCTGGAGTACCTCAGCCTTCTGGGGAATGTGGCATGTCCCAATGA
GCTGGTCAACTTGGAGAAGGATGAGGAGGACTACAAGAGATACAGATACTTTGTTCTGCA
CAAGCTGCCCAATTTGAAGTTTCTGGATGCTCGGAAAGTAACTAAACAAGAACGAGAGGA
AGCTTTGGTCAGAGGGGCGTTCATGAAGGTGGTGAAGCCCAAGGCTTCCAGTGACTGTGG
TGCTCCCTCTCCAAAGAGCCAATACACACCCCTGCCTTCAGCTTCCAGGGAACTCACCAG
TCACCGAGGTGTCCTGGGGAAGTGTCGCTATGTTTACTATGGTAAAAACTCGGAGGGCAA
CAGATTTATCCGAGATGACCAGCTCTGAAGGCAAGTTCTATATGCCTTAGCCAGTGACCT
AAGAGTGAAAGAAAAAAAGGGAAAGCAAAAATAAAGAAAAAGCTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCGCTGCCGCCTCCGCGCTCCTGCTCCGCGCTCCGCCCTCGGTACCGCGAGTCCGCCC
CGTCGCCATGGCTGGGCTTGTGGTCAGTGGAACTCAAGTGTCCTACATAGGCCAGGACTG
CAGAGAGATTCCAGAGCACCTCGGCAGGGACTATGGACACTTTGCAAAGAGGCTCGACCT
GAGCTTTAACCTTCTGAGGTCACTGGAAGGACTGAGCGCGTTCGGGAGCCTGGAGGAACT
CATCTTGGACAACAATCTGCTGGGGAACGACCTCGTGTTGCCAGGGTTACCCAGTTTCCA
TACCTTAACCCTCAACAAGAACCAGATCACTGACTTGGAGTGTCTGCTTGATCACCTGGC
AGAAGTGACACCAGCTCTGGAGTACCTCAGCCTTCTGGGGAATGTGGCATGTCCCAATGA
GCTGGTCAACTTGGAGAAGGATGAGGAGGACTACAAGAGATACAGATACTTTGTTCTGCA
CAAGCTGCCCAATTTGAAGTTTCTGGATGCTCGGAAAGTAACTAAACAAGAACGAGAGGA
AGCTTTGGTCAGAGGGGCGTTCATGAAGGTGGTGAAGCCCAAGGCTTCCAGTGACTGTGG
TGCTCCCTCTCCAAAGAGCCAATACACACCCCTGCCTTCAGCTTCCAGGGAACTCACCAG
TCACCGAGGTGTCCTGGGGAAGTGTCGCTATGTTTACTATGGTAAAAACTCGGAGGGCAA
CAGATTTATCCGAGATGACCAGCTCTGAAGGCAAGTTCTATATGCCTTAGCCAGTGACCT
AAGAGTGAAAGAAAAAAAGGGAAAGCAAAAATAAAGAAAAAGCTAAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               CJ011_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               CJ011_MOUSE

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               95-200, gnl|bosTau2|chr6 (36178395-36178290)
               

               
               95-200, gnl|canFam2|chr4 (28828035-28828150)
               

               
               95-200, gnl|danRer3|chr13 (14892016-14891902)
               

               
               95-200, gnl|echTel1|scaffold_320662 (58150-58035)
               

               
               95-200, gnl|galGal2|chr6 (13797400-13797282)
               

               
               95-200, gnl|hg17|chr10 (76868156-76868271)
               

               
               95-200, gnl|Hg17|chr10 (76868155-76868260)
               

               
               95-200, gnl|mm7|chr14 (19686205-19686320)
               

               
               95-200, gnl|Mm7|chr14 (19686204-19686309)
               

               
               95-200, gnl|monDom2|scaffold_14 (3612469-3612584)
               

               
               95-200, gnl|oryCun1|scaffold_212821 (279364-279249)
               

               
               95-200, gnl|panTro1|chr8 (78131445-78131560)
               

               
               95-200, gnl|rheMac2|chr9 (61573276-61573161)
               

               
               95-200, gnl|rn3|chr15 (2317445-2317330)
               

               
               95-200, gnl|tetNig1|chr17 (6402114-6402003)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-200, gnl|bosTau2|chr6 (36178395-36178290)
               

               
               95-200, gnl|canFam2|chr4 (28828035-28828150)
               

               
               95-200, gnl|danRer3|chr13 (14892016-14891902)
               

               
               95-200, gnl|echTel1|scaffold_320662 (58150-58035)
               

               
               95-200, gnl|galGal2|chr6 (13797400-13797282)
               

               
               95-200, gnl|hg17|chr10 (76868156-76868271)
               

               
               95-200, gnl|Hg17|chr10 (76868155-76868260)
               

               
               95-200, gnl|mm7|chr14 (19686205-19686320)
               

               
               95-200, gnl|Mm7|chr14 (19686204-19686309)
               

               
               95-200, gnl|monDom2|scaffold_14 (3612469-3612584)
               

               
               95-200, gnl|oryCun1|scaffold_212821 (279364-279249)
               

               
               95-200, gnl|panTro1|chr8 (78131445-78131560)
               

               
               95-200, gnl|rheMac2|chr9 (61573276-61573161)
               

               
               95-200, gnl|rn3|chr15 (2317445-2317330)
               

               
               95-200, gnl|tetNig1|chr17 (6402114-6402003)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cmu (0.186393)
               

               
               cut (0.169924)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               cut (0.169924)

	95-200, gnl\|bosTau2\|chr6 (36178395-36178290)
	95-200, gnl\|canFam2\|chr4 (28828035-28828150)
	95-200, gnl\|danRer3\|chr13 (14892016-14891902)
	95-200, gnl\|echTel1\|scaffold_320662 (58150-58035)
	95-200, gnl\|galGal2\|chr6 (13797400-13797282)
	95-200, gnl\|hg17\|chr10 (76868156-76868271)
	95-200, gnl\|Hg17\|chr10 (76868155-76868260)
	95-200, gnl\|mm7\|chr14 (19686205-19686320)
	95-200, gnl\|Mm7\|chr14 (19686204-19686309)
	95-200, gnl\|monDom2\|scaffold_14 (3612469-3612584)
	95-200, gnl\|oryCun1\|scaffold_212821 (279364-279249)
	95-200, gnl\|panTro1\|chr8 (78131445-78131560)
	95-200, gnl\|rheMac2\|chr9 (61573276-61573161)
	95-200, gnl\|rn3\|chr15 (2317445-2317330)
	95-200, gnl\|tetNig1\|chr17 (6402114-6402003)