Non-Coding RNA Search

Ss1.1-Pig4-TMW8018C20.5

Sequence:


               
               CAACGATGCCCTGGCCATCCTGCGTCAAGCTCGGGACCCCAGACAAGCCGTGATTGTCAC
AAGGAAGCCAACCCTGGAGGCCTCGCCTGACCTCAACTCCTCCACAGATTCTGCAGCTTC
CGTCTCTGTGGCCAGTGACATCTCCATAGACTCCACAGAGGCCACAGTCTGCACGGTGAC
CCTGGAGAAGACCTCTGCGGGGCTGGGCTTCAGCCTGGAAGGAGGGAAGGGCTCCCTGCA
CGGAGACAAGCCTCTGACGGTTAACAGGATCTTCAGAGGGGCGGCCTCAGAACAGAATGA
GACGATCCAGCCAGGAGATGAGATCTTACACTTGGCTGGCACTGCCGTGCAGGGCCTCAC
ACGGTTCGAAGCCTGGAACATCATCAAGGCCTTGCCTGATGGACCTGTCACGATTGTCAT
CAGGAGGAAAAGCCTCCAGTCCAAGGGGACCACAGGGGCTGGAGACCCCTAGGCCGAGTG
CCAGTGCTGATGCCAAAGCCAACAGCACACAGCTCCCCACAACCGCTCATTCTCAGGGTC
ACTGTAACCCCATCTGATGGGGGAAAGCATAGGTGTGTTTCCTGGTGGCTACCGGGTCCG
GACCTTCTGGGATACTACCCAGCAAGAGGGTTGTCCCAGATGTTACGGCAGAGTCACACT
GGGGTGGCTGATACAGACTACAGGCTATGTATAGAGAGAGCTTCATGATAATATTGTGGT
GCTGTAAATAAAATGGATCTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACGATGCCCTGGCCATCCTGCGTCAAGCTCGGGACCCCAGACAAGCCGTGATTGTCAC
AAGGAAGCCAACCCTGGAGGCCTCGCCTGACCTCAACTCCTCCACAGATTCTGCAGCTTC
CGTCTCTGTGGCCAGTGACATCTCCATAGACTCCACAGAGGCCACAGTCTGCACGGTGAC
CCTGGAGAAGACCTCTGCGGGGCTGGGCTTCAGCCTGGAAGGAGGGAAGGGCTCCCTGCA
CGGAGACAAGCCTCTGACGGTTAACAGGATCTTCAGAGGGGCGGCCTCAGAACAGAATGA
GACGATCCAGCCAGGAGATGAGATCTTACACTTGGCTGGCACTGCCGTGCAGGGCCTCAC
ACGGTTCGAAGCCTGGAACATCATCAAGGCCTTGCCTGATGGACCTGTCACGATTGTCAT
CAGGAGGAAAAGCCTCCAGTCCAAGGGGACCACAGGGGCTGGAGACCCCTAGGCCGAGTG
CCAGTGCTGATGCCAAAGCCAACAGCACACAGCTCCCCACAACCGCTCATTCTCAGGGTC
ACTGTAACCCCATCTGATGGGGGAAAGCATAGGTGTGTTTCCTGGTGGCTACCGGGTCCG
GACCTTCTGGGATACTACCCAGCAAGAGGGTTGTCCCAGATGTTACGGCAGAGTCACACT
GGGGTGGCTGATACAGACTACAGGCTATGTATAGAGAGAGCTTCATGATAATATTGTGGT
GCTGTAAATAAAATGGATCTATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61885337|ref|XP_589876.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61885337|ref|XP_589876.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               539-648, - strand, RNAz p=0.845967

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               539-648, - strand, RNAz p=0.845967

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-154, gnl|bosTau2|chr21 (19904261-19904414)
               

               
               1-154, gnl|canFam2|chr3 (59339378-59339141)
               

               
               1-154, gnl|danRer3|chrUn (57479201-57479036)
               

               
               1-154, gnl|dasNov1|scaffold_11015 (73038-73266)
               

               
               1-154, gnl|echTel1|scaffold_205392 (3709-3945)
               

               
               1-154, gnl|fr1|chrUn (227104311-227104518)
               

               
               1-154, gnl|galGal2|chr10 (12694914-12694706)
               

               
               1-154, gnl|hg17|chr15 (79385278-79385514)
               

               
               1-154, gnl|Hg17|chr15 (79385408-79385561)
               

               
               1-154, gnl|loxAfr1|scaffold_9377 (11276-11512)
               

               
               1-154, gnl|mm7|chr7 (79568168-79567932)
               

               
               1-154, gnl|Mm7|chr7 (79568036-79567883)
               

               
               1-154, gnl|monDom2|scaffold_45 (5530530-5530297)
               

               
               1-154, gnl|panTro1|chr16 (80114475-80114711)
               

               
               1-154, gnl|rheMac2|chr7 (60461306-60461542)
               

               
               1-154, gnl|rn3|chr1 (139989887-139989651)
               

               
               1-154, gnl|tetNig1|chrUn_random (32723571-32723735)
               

               
               1-154, gnl|xenTro1|scaffold_828 (339677-339498)
               


               
               270-742, gnl|bosTau2|chr21 (19907485-19907960)
               

               
               270-742, gnl|Hg17|chr15 (79387992-79388477)
               

               
               270-742, gnl|Mm7|chr7 (79565665-79565195)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-154, gnl|bosTau2|chr21 (19904261-19904414)
               

               
               1-154, gnl|canFam2|chr3 (59339378-59339141)
               

               
               1-154, gnl|danRer3|chrUn (57479201-57479036)
               

               
               1-154, gnl|dasNov1|scaffold_11015 (73038-73266)
               

               
               1-154, gnl|echTel1|scaffold_205392 (3709-3945)
               

               
               1-154, gnl|fr1|chrUn (227104311-227104518)
               

               
               1-154, gnl|galGal2|chr10 (12694914-12694706)
               

               
               1-154, gnl|hg17|chr15 (79385278-79385514)
               

               
               1-154, gnl|Hg17|chr15 (79385408-79385561)
               

               
               1-154, gnl|loxAfr1|scaffold_9377 (11276-11512)
               

               
               1-154, gnl|mm7|chr7 (79568168-79567932)
               

               
               1-154, gnl|Mm7|chr7 (79568036-79567883)
               

               
               1-154, gnl|monDom2|scaffold_45 (5530530-5530297)
               

               
               1-154, gnl|panTro1|chr16 (80114475-80114711)
               

               
               1-154, gnl|rheMac2|chr7 (60461306-60461542)
               

               
               1-154, gnl|rn3|chr1 (139989887-139989651)
               

               
               1-154, gnl|tetNig1|chrUn_random (32723571-32723735)
               

               
               1-154, gnl|xenTro1|scaffold_828 (339677-339498)
               


               
               270-742, gnl|bosTau2|chr21 (19907485-19907960)
               

               
               270-742, gnl|Hg17|chr15 (79387992-79388477)
               

               
               270-742, gnl|Mm7|chr7 (79565665-79565195)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               cly (0.120642)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               cly (0.120642)

	1-154, gnl\|bosTau2\|chr21 (19904261-19904414)
	1-154, gnl\|canFam2\|chr3 (59339378-59339141)
	1-154, gnl\|danRer3\|chrUn (57479201-57479036)
	1-154, gnl\|dasNov1\|scaffold_11015 (73038-73266)
	1-154, gnl\|echTel1\|scaffold_205392 (3709-3945)
	1-154, gnl\|fr1\|chrUn (227104311-227104518)
	1-154, gnl\|galGal2\|chr10 (12694914-12694706)
	1-154, gnl\|hg17\|chr15 (79385278-79385514)
	1-154, gnl\|Hg17\|chr15 (79385408-79385561)
	1-154, gnl\|loxAfr1\|scaffold_9377 (11276-11512)
	1-154, gnl\|mm7\|chr7 (79568168-79567932)
	1-154, gnl\|Mm7\|chr7 (79568036-79567883)
	1-154, gnl\|monDom2\|scaffold_45 (5530530-5530297)
	1-154, gnl\|panTro1\|chr16 (80114475-80114711)
	1-154, gnl\|rheMac2\|chr7 (60461306-60461542)
	1-154, gnl\|rn3\|chr1 (139989887-139989651)
	1-154, gnl\|tetNig1\|chrUn_random (32723571-32723735)
	1-154, gnl\|xenTro1\|scaffold_828 (339677-339498)

	270-742, gnl\|bosTau2\|chr21 (19907485-19907960)
	270-742, gnl\|Hg17\|chr15 (79387992-79388477)
	270-742, gnl\|Mm7\|chr7 (79565665-79565195)