Ss1.1-Pig4-TMW8018C24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGACACCCCCACAGGCATCCCAAAAGGCGTGGTGAACTTCAAAAGCAACCGTGGTTCCA ACCAGAGCTGGGGCTGGGCCATGGCAGGGAGCAGCAGCATCCTGGCGGAATTTGGATCCC TGCACTTGGAGTTCCTACACCTCACCGAGCTCTCTGGCAACCAGGTCTTCGCAGAAAAGG TCAGGAACATCCGAAAGGTCCTTAAGGATCTTGACAAGCCCTTCGGCCTCTACCCCAACT TCCTCAGCCCTGTCAGCGGGAACTGGATGCAACACCATGTCTCGGTTGGAGGACTCGGGG ACAGTTTTTATGAATATTTGATCAAATCCTGGCTGATGTCGGCCAAGACTGATATGGAGG CTAAAGACATGTACTACGAAGCCTTGGAGGCAATAGAGACCCACTTGCTGAATGTCTCTC CCGGGGGGCTGACCTACATTGCTGAGTGGCGAGGGGGGATTCTGGACCACAAGATGGGGC ACCTGGCCTGTTTCTCGGGGGGCATGATCGCCCTCGGCGCTGACGATGCCAAGGAAGAAA AGAGGGCCCACTACCGAGAGCTCGCGGCCCAGATCACCAAGACGTGCCACGAATCGTACG CCCGCTCAGATACCAAACTGGGGCCCGAGGCCTTCTGGTTTAACTCCGGCCTAGAGGCCA TGGCCACGCAGATGAGCGAGAGCTACTACATCCTGCGGCCGGAGGTGGTGGAGAGCTACA TGTACCTGTGGCGACAGACCCACAACCCCATCTATAGGGAGTGGGGCTGGGATGTGGTCA TGGCCTTGGAGAAATACTGCCGAACAGAAGCCGGCTTCTCCGGGATCCAAGACGTGTACA GCACAGTTCCAAGCCATGACAACAAGCAGCAGACTTTTTTTCTAGCGGAGACACTAAAGT ATCTCTATCTTCTGTTCTCTGAAGATGACGTGCTCTCCCTGGAAGACTGGGTGTTCAACA CGGAGGCCCACCCACTCCCCGTGAACCACTCGCACAGCTCAGCCAGGGGCGGGGGCTGAC GCGGCCCCGGCTCCCGCGGCTCCCGCTCCCAGGCCGCCTCTTCAGGATTTGGGGCTGTTC TCAAATGGATTGGGGATGGGGGCCCCTGCCTGGACCCGGCAGATGTGTTGGACAAGCCAC TTCTTTTCCTCTGTGAGGAGACAGGACTTGGAGACGCGACCGTGTCAGCCCAGGCCCAGA CATTCCTCTCCACGGAGAATTTCTCTGAAACCCGCTCACTTGCCATTCCAGGGCCAAAGC ACCAGAGGTTTGCCCTGCAACCTCCTGTATTTGATCCACTTCTTTTTGTTTAGGATTTTT TTTTTTCAGTTTTGCTTGATTTTTGCCTTTTCTCGCCCGTTGTGTTTTATCGCAGATTAC AAATGCAGCTTTCAACATCATGTGCTTTCAAAAAGGGTGTCATCTCGATAAACTGAACCT TAAAGTGTTTGCACACACACGAATCTTGACCCCATTTTCTATATTTTGAATTCCTTTTGC CCAATATTTACTATACTTCAATTATGTGTAATTTACCTTATAATTTGAAGAGAGGGTTCC CCTTTGATTTGGGCCTAAGTGTTACGAATCACTAGTGCCGTTTTCATTATTGTAATGGAA AAATCTGTAAACTTACAATAAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGACACCCCCACAGGCATCCCAAAAGGCGTGGTGAACTTCAAAAGCAACCGTGGTTCCA ACCAGAGCTGGGGCTGGGCCATGGCAGGGAGCAGCAGCATCCTGGCGGAATTTGGATCCC TGCACTTGGAGTTCCTACACCTCACCGAGCTCTCTGGCAACCAGGTCTTCGCAGAAAAGG TCAGGAACATCCGAAAGGTCCTTAAGGATCTTGACAAGCCCTTCGGCCTCTACCCCAACT TCCTCAGCCCTGTCAGCGGGAACTGGATGCAACACCATGTCTCGGTTGGAGGACTCGGGG ACAGTTTTTATGAATATTTGATCAAATCCTGGCTGATGTCGGCCAAGACTGATATGGAGG CTAAAGACATGTACTACGAAGCCTTGGAGGCAATAGAGACCCACTTGCTGAATGTCTCTC CCGGGGGGCTGACCTACATTGCTGAGTGGCGAGGGGGGATTCTGGACCACAAGATGGGGC ACCTGGCCTGTTTCTCGGGGGGCATGATCGCCCTCGGCGCTGACGATGCCAAGGAAGAAA AGAGGGCCCACTACCGAGAGCTCGCGGCCCAGATCACCAAGACGTGCCACGAATCGTACG CCCGCTCAGATACCAAACTGGGGCCCGAGGCCTTCTGGTTTAACTCCGGCCTAGAGGCCA TGGCCACGCAGATGAGCGAGAGCTACTACATCCTGCGGCCGGAGGTGGTGGAGAGCTACA TGTACCTGTGGCGACAGACCCACAACCCCATCTATAGGGAGTGGGGCTGGGATGTGGTCA TGGCCTTGGAGAAATACTGCCGAACAGAAGCCGGCTTCTCCGGGATCCAAGACGTGTACA GCACAGTTCCAAGCCATGACAACAAGCAGCAGACTTTTTTTCTAGCGGAGACACTAAAGT ATCTCTATCTTCTGTTCTCTGAAGATGACGTGCTCTCCCTGGAAGACTGGGTGTTCAACA CGGAGGCCCACCCACTCCCCGTGAACCACTCGCACAGCTCAGCCAGGGGCGGGGGCTGAC GCGGCCCCGGCTCCCGCGGCTCCCGCTCCCAGGCCGCCTCTTCAGGATTTGGGGCTGTTC TCAAATGGATTGGGGATGGGGGCCCCTGCCTGGACCCGGCAGATGTGTTGGACAAGCCAC TTCTTTTCCTCTGTGAGGAGACAGGACTTGGAGACGCGACCGTGTCAGCCCAGGCCCAGA CATTCCTCTCCACGGAGAATTTCTCTGAAACCCGCTCACTTGCCATTCCAGGGCCAAAGC ACCAGAGGTTTGCCCTGCAACCTCCTGTATTTGATCCACTTCTTTTTGTTTAGGATTTTT TTTTTTCAGTTTTGCTTGATTTTTGCCTTTTCTCGCCCGTTGTGTTTTATCGCAGATTAC AAATGCAGCTTTCAACATCATGTGCTTTCAAAAAGGGTGTCATCTCGATAAACTGAACCT TAAAGTGTTTGCACACACACGAATCTTGACCCCATTTTCTATATTTTGAATTCCTTTTGC CCAATATTTACTATACTTCAATTATGTGTAATTTACCTTATAATTTGAAGAGAGGGTTCC CCTTTGATTTGGGCCTAAGTGTTACGAATCACTAGTGCCGTTTTCATTATTGTAATGGAA AAATCTGTAAACTTACAATAAAAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 54-180, gnl|bosTau2|chr2 (79627393-79627519) | |
| 54-180, gnl|canFam2|chr2 (77076205-77076000) | |
| 54-180, gnl|danRer3|chr20 (48643345-48643513) | |
| 54-180, gnl|dasNov1|scaffold_154716 (4813-4602) | |
| 54-180, gnl|echTel1|scaffold_322377 (7234-7381) | |
| 54-180, gnl|fr1|chrUn (142488137-142488005) | |
| 54-180, gnl|hg17|chr1 (25769212-25769384) | |
| 54-180, gnl|Hg17|chr1 (25769230-25769347) | |
| 54-180, gnl|loxAfr1|scaffold_42808 (7248-7081) | |
| 54-180, gnl|mm7|chr4 (133959344-133959172) | |
| 54-180, gnl|Mm7|chr4 (133959324-133959207) | |
| 54-180, gnl|monDom2|scaffold_91 (2873521-2873715) | |
| 54-180, gnl|oryCun1|scaffold_194767 (185-348) | |
| 54-180, gnl|panTro1|chr1 (26451024-26451196) | |
| 54-180, gnl|rheMac2|chr1 (28364899-28365091) | |
| 54-180, gnl|rn3|chr5 (153348300-153348132) | |
| 54-180, gnl|tetNig1|chr14 (1573150-1573271) | |
| 388-612, gnl|bosTau2|chr2 (79643397-79643621) | |
| 388-612, gnl|canFam2|chr2 (77061976-77061801) | |
| 388-612, gnl|danRer3|chr20 (48664660-48664835) | |
| 388-612, gnl|dasNov1|scaffold_5367 (5344-5518) | |
| 388-612, gnl|echTel1|scaffold_170217 (2023-1871) | |
| 388-612, gnl|fr1|chrUn (142484384-142484218) | |
| 388-612, gnl|galGal2|chr23 (1919307-1919123) | |
| 388-612, gnl|hg17|chr1 (25788731-25788906) | |
| 388-612, gnl|Hg17|chr1 (25788740-25788964) | |
| 388-612, gnl|loxAfr1|scaffold_35474 (9293-9124) | |
| 388-612, gnl|mm7|chr4 (133947565-133947390) | |
| 388-612, gnl|Mm7|chr4 (133947554-133947330) | |
| 388-612, gnl|monDom2|scaffold_91 (2898132-2898301) | |
| 388-612, gnl|oryCun1|scaffold_194767 (11930-12105) | |
| 388-612, gnl|panTro1|chr1 (26468183-26468358) | |
| 388-612, gnl|rheMac2|chr1 (28380158-28380333) | |
| 388-612, gnl|rn3|chr5 (153335954-153335779) | |
| 388-612, gnl|tetNig1|chr14 (1575786-1575955) | |
| 388-612, gnl|xenTro1|scaffold_439 (844488-844657) | |
| 899-1644, gnl|bosTau2|chr2 (79648235-79648974) | |
| 899-1644, gnl|Hg17|chr1 (25794300-25795069) | |
| 899-1644, gnl|Mm7|chr4 (133942269-133941459) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 54-180, gnl|bosTau2|chr2 (79627393-79627519) | |
| 54-180, gnl|canFam2|chr2 (77076205-77076000) | |
| 54-180, gnl|danRer3|chr20 (48643345-48643513) | |
| 54-180, gnl|dasNov1|scaffold_154716 (4813-4602) | |
| 54-180, gnl|echTel1|scaffold_322377 (7234-7381) | |
| 54-180, gnl|fr1|chrUn (142488137-142488005) | |
| 54-180, gnl|hg17|chr1 (25769212-25769384) | |
| 54-180, gnl|Hg17|chr1 (25769230-25769347) | |
| 54-180, gnl|loxAfr1|scaffold_42808 (7248-7081) | |
| 54-180, gnl|mm7|chr4 (133959344-133959172) | |
| 54-180, gnl|Mm7|chr4 (133959324-133959207) | |
| 54-180, gnl|monDom2|scaffold_91 (2873521-2873715) | |
| 54-180, gnl|oryCun1|scaffold_194767 (185-348) | |
| 54-180, gnl|panTro1|chr1 (26451024-26451196) | |
| 54-180, gnl|rheMac2|chr1 (28364899-28365091) | |
| 54-180, gnl|rn3|chr5 (153348300-153348132) | |
| 54-180, gnl|tetNig1|chr14 (1573150-1573271) | |
| 388-612, gnl|bosTau2|chr2 (79643397-79643621) | |
| 388-612, gnl|canFam2|chr2 (77061976-77061801) | |
| 388-612, gnl|danRer3|chr20 (48664660-48664835) | |
| 388-612, gnl|dasNov1|scaffold_5367 (5344-5518) | |
| 388-612, gnl|echTel1|scaffold_170217 (2023-1871) | |
| 388-612, gnl|fr1|chrUn (142484384-142484218) | |
| 388-612, gnl|galGal2|chr23 (1919307-1919123) | |
| 388-612, gnl|hg17|chr1 (25788731-25788906) | |
| 388-612, gnl|Hg17|chr1 (25788740-25788964) | |
| 388-612, gnl|loxAfr1|scaffold_35474 (9293-9124) | |
| 388-612, gnl|mm7|chr4 (133947565-133947390) | |
| 388-612, gnl|Mm7|chr4 (133947554-133947330) | |
| 388-612, gnl|monDom2|scaffold_91 (2898132-2898301) | |
| 388-612, gnl|oryCun1|scaffold_194767 (11930-12105) | |
| 388-612, gnl|panTro1|chr1 (26468183-26468358) | |
| 388-612, gnl|rheMac2|chr1 (28380158-28380333) | |
| 388-612, gnl|rn3|chr5 (153335954-153335779) | |
| 388-612, gnl|tetNig1|chr14 (1575786-1575955) | |
| 388-612, gnl|xenTro1|scaffold_439 (844488-844657) | |
| 899-1644, gnl|bosTau2|chr2 (79648235-79648974) | |
| 899-1644, gnl|Hg17|chr1 (25794300-25795069) | |
| 899-1644, gnl|Mm7|chr4 (133942269-133941459) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cov (0.264306) | |
| thg (0.253582) | |
| ill (0.175593) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| mga (0.160205) | |
| cli (0.152812) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| kid (0.129735) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.264306) | |
| thg (0.253582) | |
| ill (0.175593) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| mga (0.160205) | |
| cli (0.152812) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| kid (0.129735) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) |