Non-Coding RNA Search

Ss1.1-Pig4-TMW8018D09.5

Sequence:


               
               GGTCTTGCCTGATTTGAGGGAGAATAGTGGATGAAATGGAGGGGGCAATGTGCCCGTTGT
GAGGGAGCCCTAAAAATCCCCAGTACACAAAAGTCATGTTCCTCCGTTTTTAGTGTAATC
CCGAGGTTGCCCTTCACCAGATTGTGGGAGGGGTGGGGGGGAGTAAATCTTGGTGGAAGG
CAACTCTCTGGTGATATTTAAAGAAGTGCGGGTTGGGCATGTTCATTCTTAGAAATGCCA
ATTTTCCTTTGGAATCCTAATCAAAGTCTCCAGGATGATTGAAAGGGATAGGAGGGTGCA
AGTTCAGTGGTTCTAGATCTAGTTGGCAAACCTTCTGCCCTTATGACCCTGAGTCTTTGG
ACAAAACAAAACAGTGATATTTCTTTGAAAACAGACCCATTCTTTTGCTCTCCCGCAGGA
GGTTTGGTTGGGTCGGCTGTAGCCCCAGGGTGTGGTTGAAATGGATTACTGCCTAGCTGA
GCCAAAACGTTTGCTTGTATTTGTTGGACCACTACAGCAAACCGCTGCTTACGATGCATT
GTGTATTTCTGTAGTACTGTTTTGCATTTTCCATACAAACACAAAACTTTGCAAGTCAAT
CACTGTTGTTCTTATGGTACTGTTTTTAAAAAAAAAAAGAAAAAGGAGAAAGAAAAAAAG
TGGAGAAAACCAGCCAATTATTGTGTGTACAGAGTTTAAAAATTGTAATTAATAGAGCCT
GTTTAAAAACAAACAAAACAACTGTTGCCTTTTTTCTTGTATAAAAGAGAATTTATGACA
AAAATTTAGCTGTGAGGAATGTGATATGTGTTTATATTTCTGAATATGGGACAAATTGAT
TCATTGGGATATATTTTACTGTAAACTAAATCAGGTATGTAAAGCTGTTTTAAAATGGGA
GACTATATAAGTAATTCTTTGAAGCTTTAGTTGGTCTGAATACCATCATTTCCTCCATGG
TGAGCCTGCTTGTGAATTATTAAGCACCTGTTTGCATTTCTGTTCTTCATTCATCTCTTG
CAGTGTGCTATGGACTTAATGCTCTTTCTGTGTTGATGAAAAGCAGTATGTGGGCCAATC
TTTTTATAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTTGCCTGATTTGAGGGAGAATAGTGGATGAAATGGAGGGGGCAATGTGCCCGTTGT
GAGGGAGCCCTAAAAATCCCCAGTACACAAAAGTCATGTTCCTCCGTTTTTAGTGTAATC
CCGAGGTTGCCCTTCACCAGATTGTGGGAGGGGTGGGGGGGAGTAAATCTTGGTGGAAGG
CAACTCTCTGGTGATATTTAAAGAAGTGCGGGTTGGGCATGTTCATTCTTAGAAATGCCA
ATTTTCCTTTGGAATCCTAATCAAAGTCTCCAGGATGATTGAAAGGGATAGGAGGGTGCA
AGTTCAGTGGTTCTAGATCTAGTTGGCAAACCTTCTGCCCTTATGACCCTGAGTCTTTGG
ACAAAACAAAACAGTGATATTTCTTTGAAAACAGACCCATTCTTTTGCTCTCCCGCAGGA
GGTTTGGTTGGGTCGGCTGTAGCCCCAGGGTGTGGTTGAAATGGATTACTGCCTAGCTGA
GCCAAAACGTTTGCTTGTATTTGTTGGACCACTACAGCAAACCGCTGCTTACGATGCATT
GTGTATTTCTGTAGTACTGTTTTGCATTTTCCATACAAACACAAAACTTTGCAAGTCAAT
CACTGTTGTTCTTATGGTACTGTTTTTAAAAAAAAAAAGAAAAAGGAGAAAGAAAAAAAG
TGGAGAAAACCAGCCAATTATTGTGTGTACAGAGTTTAAAAATTGTAATTAATAGAGCCT
GTTTAAAAACAAACAAAACAACTGTTGCCTTTTTTCTTGTATAAAAGAGAATTTATGACA
AAAATTTAGCTGTGAGGAATGTGATATGTGTTTATATTTCTGAATATGGGACAAATTGAT
TCATTGGGATATATTTTACTGTAAACTAAATCAGGTATGTAAAGCTGTTTTAAAATGGGA
GACTATATAAGTAATTCTTTGAAGCTTTAGTTGGTCTGAATACCATCATTTCCTCCATGG
TGAGCCTGCTTGTGAATTATTAAGCACCTGTTTGCATTTCTGTTCTTCATTCATCTCTTG
CAGTGTGCTATGGACTTAATGCTCTTTCTGTGTTGATGAAAAGCAGTATGTGGGCCAATC
TTTTTATAAAAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-1092, gnl|bosTau2|chr22 (26353247-26352178)
               

               
               2-1092, gnl|Hg17|chr3 (65316253-65315166)
               

               
               2-1092, gnl|Mm7|chr6 (93765540-93764465)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1092, gnl|bosTau2|chr22 (26353247-26352178)
               

               
               2-1092, gnl|Hg17|chr3 (65316253-65315166)
               

               
               2-1092, gnl|Mm7|chr6 (93765540-93764465)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               rec (0.17307)
               

               
               cut (0.169924)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	2-1092, gnl\|bosTau2\|chr22 (26353247-26352178)
	2-1092, gnl\|Hg17\|chr3 (65316253-65315166)
	2-1092, gnl\|Mm7\|chr6 (93765540-93764465)

	rec (0.17307)
	cut (0.169924)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)
	ecc (0.115035)
	spc (0.113366)
	eje (0.0988338)