Non-Coding RNA Search

Ss1.1-Pig4-TMW8018D13.5

Sequence:


               
               AGAAAAAGAAAGACGCAGAAAGCTGAACCTGTGCCTCTACTGTGGGAATGGAGGTCACTA
CGCCGACAACTGTCCTGCCAAGGCCTCGAAGGCTTCGCCGGCGGGAAACTCCCCGGCCCC
GCTGTAGAGGGACCTTCAGCGACCGGGCCGGAATTAATAAGGTCCCCACAAGATGATGCT
GCTTCATCTCCACACTTGCAAGTGATGCTCCAGATTCATCTTCCTGGCAGACACACCCTG
TTCGTCCGAGCCATGATCGATTCTGGTGCTTCCGGCAACTTCATTGATCACGAATACGTC
GCTCAGAATGGCATTCCTCTGAGGGTCAAGGACTGGCCAATACTTGTAGAAGCGATTGAT
GGACGTCCCATAGCATCGGGCCCCGTTGTCCACGAAACACACGACCTGATAGTCGACTTG
GGAGATCACCGTGAGGTGCTGTCATTCGATGTGACTCAGTCTCCATTTTTCCCCATCGTC
CTAGGGGTGCGCTGGCTGAGCACACACGATCCCAACATCACGTGGAGCACCCGATCGATC
GTCTTCGACTCTGAATATTGCCGATACCACTGCCGGATGTATTCTCCAATACCACCACCG
CTCCCACCACCAGCACAACCGTCATTCTATTACCCGGTGGAAGGGTACAGAGTTTACCAG
CCAGTGAGGTATTACTACGTCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAAAGAAAGACGCAGAAAGCTGAACCTGTGCCTCTACTGTGGGAATGGAGGTCACTA
CGCCGACAACTGTCCTGCCAAGGCCTCGAAGGCTTCGCCGGCGGGAAACTCCCCGGCCCC
GCTGTAGAGGGACCTTCAGCGACCGGGCCGGAATTAATAAGGTCCCCACAAGATGATGCT
GCTTCATCTCCACACTTGCAAGTGATGCTCCAGATTCATCTTCCTGGCAGACACACCCTG
TTCGTCCGAGCCATGATCGATTCTGGTGCTTCCGGCAACTTCATTGATCACGAATACGTC
GCTCAGAATGGCATTCCTCTGAGGGTCAAGGACTGGCCAATACTTGTAGAAGCGATTGAT
GGACGTCCCATAGCATCGGGCCCCGTTGTCCACGAAACACACGACCTGATAGTCGACTTG
GGAGATCACCGTGAGGTGCTGTCATTCGATGTGACTCAGTCTCCATTTTTCCCCATCGTC
CTAGGGGTGCGCTGGCTGAGCACACACGATCCCAACATCACGTGGAGCACCCGATCGATC
GTCTTCGACTCTGAATATTGCCGATACCACTGCCGGATGTATTCTCCAATACCACCACCG
CTCCCACCACCAGCACAACCGTCATTCTATTACCCGGTGGAAGGGTACAGAGTTTACCAG
CCAGTGAGGTATTACTACGTCCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9UPV1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9UPV1_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-319, - strand, RNAz p=0.841282
               

               
               400-559, + strand, RNAz p=0.958038

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-319, - strand, RNAz p=0.841282
               

               
               400-559, + strand, RNAz p=0.958038

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-668, gnl|bosTau2|chr4 (2042917-2043584)
               

               
               1-668, gnl|Hg17|chr7 (93938371-93939123)
               

               
               1-668, gnl|Mm7|chr6 (4708111-4709592)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-668, gnl|bosTau2|chr4 (2042917-2043584)
               

               
               1-668, gnl|Hg17|chr7 (93938371-93939123)
               

               
               1-668, gnl|Mm7|chr6 (4708111-4709592)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	40-319, - strand, RNAz p=0.841282
	400-559, + strand, RNAz p=0.958038

	1-668, gnl\|bosTau2\|chr4 (2042917-2043584)
	1-668, gnl\|Hg17\|chr7 (93938371-93939123)
	1-668, gnl\|Mm7\|chr6 (4708111-4709592)