Ss1.1-Pig4-TMW8018E06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGCCGCCGGGATCGTTGGCGACGCTGGGTGTGTTGCAGCTTTTGTATTACTCGTTCTG TGGGCACTGCGAGCTAAAGGAGCAGAGCTTGCGGGCCAGTCATCATGTCGCGCTACGGGC GGTACGGAGGAGAAACCAAGGTGTATGTTGGTAACCTGGGAACTGGTGCTGGCAAAGGAG AGTTAGAAAGGGCTTTCAGTTATTATGGTCCCTTAAGAACTGTGTGGATTGCCAGAAATC CTCCAGGATTTGCCTTTGTGGAATTTGAAGATCCTAGAGATGCAGAAGATGCAGTGCGAG GCCTGGATGGCAAAGTGATTTGTGGTTCTCGAGTGAGAGTTGAACTATCAACAGGCATGC CTCGGAGATCTCGTTTTGATAGACCACCTGCCCGACGTCCCTTTGATCCCAATGATAGAT GCTATGAGTGTGGCGAAAAGGGACATTATGCTTATGATTGTCATCGCTATAGCCGGCGGA GAAGAAGCAGGTCACGGTCTAGATCACATTCGAGATCCAGGGGTAGGCGATACTCTCGCT CACGCAGCAGGAGCAGGGGAAGGAGGTCAAGATCAGCCTCTCCTCGGCGATCAAGATCTG TGTCTCTTCGTAGATCAAGATCAGCTTCACTCAGACGATCTAGGTCTGGTTCTATAAAAG GATCGAGGTATTTCCAATCCCGGTCCAGGTCGAGATCAAGATCCAGGTCTCTTTCACGAC CAAGAAGCAGCCGATCAAAGTCCAGATCGCCATCTCCCAAAAGAAGTCGTTCCCCATCAG GAAGTCCAAGAAGAAGTGCAAGTCCTGAAAGAGTGGACTAAAGTTTTTAAGTTCACCTTT TAGGGAAAAGTTATTTTGTTTACATTATTATAAGGGATTTGTGATGTCTGTAAAGTGTAA CCTAGGGAAGGGTATTTCAACCGTCTAATCAAAATGGATCTGGACTATTACTCTGTAAAT TCACAGCAGTAAGATAATATAAATTTTTGTTGAATGTATTAACATCCTATGGTCTGAAAA TGTGGGTTTTTATTTGGCACATTTAAATAAAATGTTTCTAACTAGAAAAAAAAAAAAAAA AGACCATGGGCCAAAGAGGGTCGACCTGCAAACTTGCAAGGTTTATTTTAAATACACATT ACAGTGTTTTATATTATGTAATTCTAAGATGTAATTGAGTTTTTAACAATCTTTTTTTAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGCCGCCGGGATCGTTGGCGACGCTGGGTGTGTTGCAGCTTTTGTATTACTCGTTCTG TGGGCACTGCGAGCTAAAGGAGCAGAGCTTGCGGGCCAGTCATCATGTCGCGCTACGGGC GGTACGGAGGAGAAACCAAGGTGTATGTTGGTAACCTGGGAACTGGTGCTGGCAAAGGAG AGTTAGAAAGGGCTTTCAGTTATTATGGTCCCTTAAGAACTGTGTGGATTGCCAGAAATC CTCCAGGATTTGCCTTTGTGGAATTTGAAGATCCTAGAGATGCAGAAGATGCAGTGCGAG GCCTGGATGGCAAAGTGATTTGTGGTTCTCGAGTGAGAGTTGAACTATCAACAGGCATGC CTCGGAGATCTCGTTTTGATAGACCACCTGCCCGACGTCCCTTTGATCCCAATGATAGAT GCTATGAGTGTGGCGAAAAGGGACATTATGCTTATGATTGTCATCGCTATAGCCGGCGGA GAAGAAGCAGGTCACGGTCTAGATCACATTCGAGATCCAGGGGTAGGCGATACTCTCGCT CACGCAGCAGGAGCAGGGGAAGGAGGTCAAGATCAGCCTCTCCTCGGCGATCAAGATCTG TGTCTCTTCGTAGATCAAGATCAGCTTCACTCAGACGATCTAGGTCTGGTTCTATAAAAG GATCGAGGTATTTCCAATCCCGGTCCAGGTCGAGATCAAGATCCAGGTCTCTTTCACGAC CAAGAAGCAGCCGATCAAAGTCCAGATCGCCATCTCCCAAAAGAAGTCGTTCCCCATCAG GAAGTCCAAGAAGAAGTGCAAGTCCTGAAAGAGTGGACTAAAGTTTTTAAGTTCACCTTT TAGGGAAAAGTTATTTTGTTTACATTATTATAAGGGATTTGTGATGTCTGTAAAGTGTAA CCTAGGGAAGGGTATTTCAACCGTCTAATCAAAATGGATCTGGACTATTACTCTGTAAAT TCACAGCAGTAAGATAATATAAATTTTTGTTGAATGTATTAACATCCTATGGTCTGAAAA TGTGGGTTTTTATTTGGCACATTTAAATAAAATGTTTCTAACTAGAAAAAAAAAAAAAAA AGACCATGGGCCAAAGAGGGTCGACCTGCAAACTTGCAAGGTTTATTTTAAATACACATT ACAGTGTTTTATATTATGTAATTCTAAGATGTAATTGAGTTTTTAACAATCTTTTTTTAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 131-316, + strand, RNAz p=0.953078 | |
| 765-856, + strand, RNAz p=0.879772 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 131-316, + strand, RNAz p=0.953078 | |
| 765-856, + strand, RNAz p=0.879772 |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 131-316, gnl|bosTau2|chr11 (16011897-16012081) | |
| 131-316, gnl|canFam2|chr17 (33917579-33917768) | |
| 131-316, gnl|danRer3|chr9 (4951231-4951414) | |
| 131-316, gnl|dasNov1|scaffold_97875 (4782-4971) | |
| 131-316, gnl|echTel1|scaffold_325042 (79984-80142) | |
| 131-316, gnl|fr1|chrUn (98421166-98420984) | |
| 131-316, gnl|galGal2|chrUn (139348014-139347831) | |
| 131-316, gnl|hg17|chr2 (38888802-38888991) | |
| 131-316, gnl|Hg17|chr2 (38888989-38888805) | |
| 131-316, gnl|loxAfr1|scaffold_87298 (9431-9242) | |
| 131-316, gnl|mm7|chr17 (78501556-78501745) | |
| 131-316, gnl|Mm7|chr17 (78501743-78501559) | |
| 131-316, gnl|monDom2|scaffold_23 (41979911-41980099) | |
| 131-316, gnl|oryCun1|scaffold_156554 (6128-6317) | |
| 131-316, gnl|panTro1|chr12 (40381027-40381216) | |
| 131-316, gnl|rheMac2|chr13 (38736796-38736985) | |
| 131-316, gnl|rn3|chr6 (3103009-3103198) | |
| 131-316, gnl|tetNig1|chr16 (6806463-6806282) | |
| 131-316, gnl|xenTro1|scaffold_41 (551262-551451) | |
| 564-676, gnl|bosTau2|chr11 (16013532-16013644) | |
| 564-676, gnl|canFam2|chr17 (33915972-33916069) | |
| 564-676, gnl|dasNov1|scaffold_89079 (10534-10437) | |
| 564-676, gnl|echTel1|scaffold_288610 (43182-43276) | |
| 564-676, gnl|galGal2|chrUn (139349475-139349388) | |
| 564-676, gnl|hg17|chr2 (38886825-38886921) | |
| 564-676, gnl|loxAfr1|scaffold_32197 (772-691) | |
| 564-676, gnl|mm7|chr17 (78499818-78499916) | |
| 564-676, gnl|Mm7|chr17 (78499947-78499835) | |
| 564-676, gnl|monDom2|scaffold_23 (41978456-41978550) | |
| 564-676, gnl|oryCun1|scaffold_156554 (4540-4627) | |
| 564-676, gnl|panTro1|chr12 (40379068-40379165) | |
| 564-676, gnl|rheMac2|chr13 (38734848-38734944) | |
| 564-676, gnl|rn3|chr6 (3101334-3101432) | |
| 564-676, gnl|xenTro1|scaffold_41 (548001-548097) | |
| 765-1066, gnl|bosTau2|chr11 (16015886-16016187) | |
| 765-1066, gnl|canFam2|chr17 (33912400-33912679) | |
| 765-1066, gnl|dasNov1|scaffold_97875 (352-627) | |
| 765-1066, gnl|echTel1|scaffold_288610 (40091-40372) | |
| 765-1066, gnl|galGal2|chrUn (139354320-139354029) | |
| 765-1066, gnl|hg17|chr2 (38883638-38883920) | |
| 765-1066, gnl|Hg17|chr2 (38883982-38883686) | |
| 765-1066, gnl|loxAfr1|scaffold_32197 (4801-4514) | |
| 765-1066, gnl|mm7|chr17 (78496972-78497255) | |
| 765-1066, gnl|Mm7|chr17 (78497317-78497023) | |
| 765-1066, gnl|monDom2|scaffold_23 (41974815-41975130) | |
| 765-1066, gnl|oryCun1|scaffold_156554 (1640-1914) | |
| 765-1066, gnl|panTro1|chr12 (40375866-40376149) | |
| 765-1066, gnl|rheMac2|chr13 (38731123-38731409) | |
| 765-1066, gnl|rn3|chr6 (3098446-3098729) | |
| 1081-1200, gnl|bosTau2|chr11 (16013090-16013210) | |
| 1081-1200, gnl|Hg17|chr2 (38887730-38887610) | |
| 1081-1200, gnl|Mm7|chr17 (78500374-78500254) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 131-316, gnl|bosTau2|chr11 (16011897-16012081) | |
| 131-316, gnl|canFam2|chr17 (33917579-33917768) | |
| 131-316, gnl|danRer3|chr9 (4951231-4951414) | |
| 131-316, gnl|dasNov1|scaffold_97875 (4782-4971) | |
| 131-316, gnl|echTel1|scaffold_325042 (79984-80142) | |
| 131-316, gnl|fr1|chrUn (98421166-98420984) | |
| 131-316, gnl|galGal2|chrUn (139348014-139347831) | |
| 131-316, gnl|hg17|chr2 (38888802-38888991) | |
| 131-316, gnl|Hg17|chr2 (38888989-38888805) | |
| 131-316, gnl|loxAfr1|scaffold_87298 (9431-9242) | |
| 131-316, gnl|mm7|chr17 (78501556-78501745) | |
| 131-316, gnl|Mm7|chr17 (78501743-78501559) | |
| 131-316, gnl|monDom2|scaffold_23 (41979911-41980099) | |
| 131-316, gnl|oryCun1|scaffold_156554 (6128-6317) | |
| 131-316, gnl|panTro1|chr12 (40381027-40381216) | |
| 131-316, gnl|rheMac2|chr13 (38736796-38736985) | |
| 131-316, gnl|rn3|chr6 (3103009-3103198) | |
| 131-316, gnl|tetNig1|chr16 (6806463-6806282) | |
| 131-316, gnl|xenTro1|scaffold_41 (551262-551451) | |
| 564-676, gnl|bosTau2|chr11 (16013532-16013644) | |
| 564-676, gnl|canFam2|chr17 (33915972-33916069) | |
| 564-676, gnl|dasNov1|scaffold_89079 (10534-10437) | |
| 564-676, gnl|echTel1|scaffold_288610 (43182-43276) | |
| 564-676, gnl|galGal2|chrUn (139349475-139349388) | |
| 564-676, gnl|hg17|chr2 (38886825-38886921) | |
| 564-676, gnl|loxAfr1|scaffold_32197 (772-691) | |
| 564-676, gnl|mm7|chr17 (78499818-78499916) | |
| 564-676, gnl|Mm7|chr17 (78499947-78499835) | |
| 564-676, gnl|monDom2|scaffold_23 (41978456-41978550) | |
| 564-676, gnl|oryCun1|scaffold_156554 (4540-4627) | |
| 564-676, gnl|panTro1|chr12 (40379068-40379165) | |
| 564-676, gnl|rheMac2|chr13 (38734848-38734944) | |
| 564-676, gnl|rn3|chr6 (3101334-3101432) | |
| 564-676, gnl|xenTro1|scaffold_41 (548001-548097) | |
| 765-1066, gnl|bosTau2|chr11 (16015886-16016187) | |
| 765-1066, gnl|canFam2|chr17 (33912400-33912679) | |
| 765-1066, gnl|dasNov1|scaffold_97875 (352-627) | |
| 765-1066, gnl|echTel1|scaffold_288610 (40091-40372) | |
| 765-1066, gnl|galGal2|chrUn (139354320-139354029) | |
| 765-1066, gnl|hg17|chr2 (38883638-38883920) | |
| 765-1066, gnl|Hg17|chr2 (38883982-38883686) | |
| 765-1066, gnl|loxAfr1|scaffold_32197 (4801-4514) | |
| 765-1066, gnl|mm7|chr17 (78496972-78497255) | |
| 765-1066, gnl|Mm7|chr17 (78497317-78497023) | |
| 765-1066, gnl|monDom2|scaffold_23 (41974815-41975130) | |
| 765-1066, gnl|oryCun1|scaffold_156554 (1640-1914) | |
| 765-1066, gnl|panTro1|chr12 (40375866-40376149) | |
| 765-1066, gnl|rheMac2|chr13 (38731123-38731409) | |
| 765-1066, gnl|rn3|chr6 (3098446-3098729) | |
| 1081-1200, gnl|bosTau2|chr11 (16013090-16013210) | |
| 1081-1200, gnl|Hg17|chr2 (38887730-38887610) | |
| 1081-1200, gnl|Mm7|chr17 (78500374-78500254) |
| Expressed library(ies): 60 entry(ies) | More info |
| Expressed library(ies): 60 entry(ies) | Help | Less info |
| spl (1.8614) | |
| sin (1.57453) | |
| thg (0.760746) | |
| sto (0.719295) | |
| tes (0.623441) | |
| bla (0.621736) | |
| cte (0.58548) | |
| csk (0.562984) | |
| ova (0.516529) | |
| cut (0.509771) | |
| cki (0.495704) | |
| eru (0.480192) | |
| ecc (0.46014) | |
| lnt (0.426925) | |
| cst (0.420109) | |
| elu (0.385356) | |
| cmu (0.372787) | |
| ill (0.351185) | |
| duo (0.345602) | |
| vin (0.332557) | |
| cje (0.330469) | |
| sme (0.305437) | |
| cag (0.302389) | |
| eje (0.296501) | |
| lin (0.291206) | |
| fce (0.271592) | |
| ret (0.257467) | |
| sug (0.254582) | |
| tra (0.246184) | |
| eep (0.245128) | |
| cly (0.241284) | |
| clu (0.239292) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| mga (0.160205) | |
| lun (0.150489) | |
| ski (0.146735) | |
| pty (0.142714) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| med (0.116252) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 60 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (1.8614) | |
| sin (1.57453) | |
| thg (0.760746) | |
| sto (0.719295) | |
| tes (0.623441) | |
| bla (0.621736) | |
| cte (0.58548) | |
| csk (0.562984) | |
| ova (0.516529) | |
| cut (0.509771) | |
| cki (0.495704) | |
| eru (0.480192) | |
| ecc (0.46014) | |
| lnt (0.426925) | |
| cst (0.420109) | |
| elu (0.385356) | |
| cmu (0.372787) | |
| ill (0.351185) | |
| duo (0.345602) | |
| vin (0.332557) | |
| cje (0.330469) | |
| sme (0.305437) | |
| cag (0.302389) | |
| eje (0.296501) | |
| lin (0.291206) | |
| fce (0.271592) | |
| ret (0.257467) | |
| sug (0.254582) | |
| tra (0.246184) | |
| eep (0.245128) | |
| cly (0.241284) | |
| clu (0.239292) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| mga (0.160205) | |
| lun (0.150489) | |
| ski (0.146735) | |
| pty (0.142714) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| med (0.116252) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |