Non-Coding RNA Search

Ss1.1-Pig4-TMW8018E22.5

Sequence:


               
               TAACGGCTGCAGTCCTCAGACCCCCGTCTTTGCTTCAGTGGAATCGCTCGCCTCCTCACA
CACAGCCACAGCCTCTCTTACAGGGAGCTGACAATTGAGCCACAGAGACAGGGAGAGCCT
CACAAGACAAAGGACAATCCCAGTGGGAGCTGACAATTGAGCCACAGAGACAGGGAGAGC
CTCACAAGACAAAGGACAATCCCAGTCACCTGTGTATGCCAGGATAATGCAGACGCCGCT
GGCCATCCCCGTGCCTGTGCTCCGGCTCCCCCGGGGCCCGGATGGCCTGAGCCGAGGCTT
TGCCCCCGACGCTCGCAGGGGCCTCCTGAAACCACAGGTTCCTGAAACTCCGGAGTCTCC
TGTAGTTCAAGAATCTCAGGAATCCCAGGAACAGCAGGCCCGAGCCGCCCTGCGGGAGCG
CTACCTCCGCAGCCTGCTGGCCATGGTGGGTCGCCAGGTGAGCTTCACGCTGCACGAGGG
CGTGCAGGTGACTGCCCACTTCGGAGCTACGGACCTGGACGTGGCCAACTTCTATGTGTC
GCAGCTGCAGACCCCGATCGGTGTACAGGCTGAGGCGCTGCTCCGGTGTAGTGACATTAT
CGCATACGCCTTCAAGCTGTGAAGTTGGTATCGTCTCATCTTTCTGCCTGGGGTGTAGCT
GCCGTCTCCCTGGCCTCCATTTGCTCACGAGCTGGGACCTTTGGGCCATAGAGTTCTGAA
TTCTCTTGGAATTTTGAGCCAAGCTCCAAGCAGCCCTGGCTTCTTAAGACCTCCAGGGTG
TAGTCAGTAAAATTCTGCATCCCAGGAGTCTTAGATCCTGTTGGAAGGAATGCTCTACCT
CACAGAACTCTAAAGGCTGCAGGTATATGGGCCTGTCACCCGTTCCTGAAGACTTGGGGC
GGCGGGGGTGAGGGAGTAAAGGAAGGCAGATTGCCTCGTGGGAAATGTCTGTTGAAGAGG
CTGCACAGTTCAGCCCCCTTGGAAATACCCCCCAGTACTACCCTCCCACCAAAGAGCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACGGCTGCAGTCCTCAGACCCCCGTCTTTGCTTCAGTGGAATCGCTCGCCTCCTCACA
CACAGCCACAGCCTCTCTTACAGGGAGCTGACAATTGAGCCACAGAGACAGGGAGAGCCT
CACAAGACAAAGGACAATCCCAGTGGGAGCTGACAATTGAGCCACAGAGACAGGGAGAGC
CTCACAAGACAAAGGACAATCCCAGTCACCTGTGTATGCCAGGATAATGCAGACGCCGCT
GGCCATCCCCGTGCCTGTGCTCCGGCTCCCCCGGGGCCCGGATGGCCTGAGCCGAGGCTT
TGCCCCCGACGCTCGCAGGGGCCTCCTGAAACCACAGGTTCCTGAAACTCCGGAGTCTCC
TGTAGTTCAAGAATCTCAGGAATCCCAGGAACAGCAGGCCCGAGCCGCCCTGCGGGAGCG
CTACCTCCGCAGCCTGCTGGCCATGGTGGGTCGCCAGGTGAGCTTCACGCTGCACGAGGG
CGTGCAGGTGACTGCCCACTTCGGAGCTACGGACCTGGACGTGGCCAACTTCTATGTGTC
GCAGCTGCAGACCCCGATCGGTGTACAGGCTGAGGCGCTGCTCCGGTGTAGTGACATTAT
CGCATACGCCTTCAAGCTGTGAAGTTGGTATCGTCTCATCTTTCTGCCTGGGGTGTAGCT
GCCGTCTCCCTGGCCTCCATTTGCTCACGAGCTGGGACCTTTGGGCCATAGAGTTCTGAA
TTCTCTTGGAATTTTGAGCCAAGCTCCAAGCAGCCCTGGCTTCTTAAGACCTCCAGGGTG
TAGTCAGTAAAATTCTGCATCCCAGGAGTCTTAGATCCTGTTGGAAGGAATGCTCTACCT
CACAGAACTCTAAAGGCTGCAGGTATATGGGCCTGTCACCCGTTCCTGAAGACTTGGGGC
GGCGGGGGTGAGGGAGTAAAGGAAGGCAGATTGCCTCGTGGGAAATGTCTGTTGAAGAGG
CTGCACAGTTCAGCCCCCTTGGAAATACCCCCCAGTACTACCCTCCCACCAAAGAGCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6IA34_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IA34_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               257-456, - strand, RNAz p=0.999047
               

               
               656-812, - strand, RNAz p=0.872439
               

               
               892-1020, - strand, RNAz p=0.997855

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-456, - strand, RNAz p=0.999047
               

               
               656-812, - strand, RNAz p=0.872439
               

               
               892-1020, - strand, RNAz p=0.997855

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               218-1020, gnl|bosTau2|chr18 (38754449-38753664)
               

               
               218-1020, gnl|Hg17|chr19 (50285204-50286002)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               218-1020, gnl|bosTau2|chr18 (38754449-38753664)
               

               
               218-1020, gnl|Hg17|chr19 (50285204-50286002)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               hlv (0.278513)
               

               
               col (0.195008)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)
               

               
               col (0.195008)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

	257-456, - strand, RNAz p=0.999047
	656-812, - strand, RNAz p=0.872439
	892-1020, - strand, RNAz p=0.997855

	218-1020, gnl\|bosTau2\|chr18 (38754449-38753664)
	218-1020, gnl\|Hg17\|chr19 (50285204-50286002)

	hlv (0.278513)
	col (0.195008)
	pla (0.133672)
	nmm (0.132802)
	cov (0.132153)
	jej (0.0989218)