Non-Coding RNA Search

Ss1.1-Pig4-TMW8018F19.5

Sequence:


               
               AGGCTCACCTGGGCACCATGGAGACCCAGAGGGCCAGCCTGTGCCTGGGGCGCTGGTCAC
TGTGGCTTCTGCTGCTGGCACTCGTGGTGCCCTCGGCCAGCGCCCAGGCCCTCAGCTACA
GGGAGGCCGTGCTTCGTGCTGTGGATCGCCTCAACGAGCAGTCCTCGGAAGCTAATCTCT
ACCGCCTCCTGGAGCTGGACCAGCCGCCCAAGGCCGACGAGGACCCGGGCACCCCGAAAC
CTGTGAGCTTCACGGTGAAGGAGACTGTGTGTCCCAGGCCGACCCGGCAGCCCCCGGAGC
TGTGTGACTTCAAGGAGAACGGGCGGGTGAAACAGTGTGTGGGGACAGTCACCCTGGATC
AGATCAAGGACCCGCTCGACATCACCTGCAATGAGGTTCAAGGTGTCAGGGGAGGTCGCC
TGTGCTATTGTAGGCGTAGGTTCTGCATCTGTGTCGGATGAGGATGACGGTTGCGACGGC
AGGCTTTCCCTCCCCCAATTTTCCCGGGGCCAGGTTTCCGTCCCCCAATTTTTCCGCCTC
CACCTTTCCGGCCCGCACCATTCGGTCCACCAAGGTTCCCTGGTAGACGGTGAAGGATTT
GCAGGCAACTCACCCAGAAGGCCTTTCGGTACATTAAAATCCCAGCAAGGAGACCTAAGC
ATCTGCTTTGCCCAGGCCCGCATCTGTCAAATAAATTCTTGTGAAACCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCTCACCTGGGCACCATGGAGACCCAGAGGGCCAGCCTGTGCCTGGGGCGCTGGTCAC
TGTGGCTTCTGCTGCTGGCACTCGTGGTGCCCTCGGCCAGCGCCCAGGCCCTCAGCTACA
GGGAGGCCGTGCTTCGTGCTGTGGATCGCCTCAACGAGCAGTCCTCGGAAGCTAATCTCT
ACCGCCTCCTGGAGCTGGACCAGCCGCCCAAGGCCGACGAGGACCCGGGCACCCCGAAAC
CTGTGAGCTTCACGGTGAAGGAGACTGTGTGTCCCAGGCCGACCCGGCAGCCCCCGGAGC
TGTGTGACTTCAAGGAGAACGGGCGGGTGAAACAGTGTGTGGGGACAGTCACCCTGGATC
AGATCAAGGACCCGCTCGACATCACCTGCAATGAGGTTCAAGGTGTCAGGGGAGGTCGCC
TGTGCTATTGTAGGCGTAGGTTCTGCATCTGTGTCGGATGAGGATGACGGTTGCGACGGC
AGGCTTTCCCTCCCCCAATTTTCCCGGGGCCAGGTTTCCGTCCCCCAATTTTTCCGCCTC
CACCTTTCCGGCCCGCACCATTCGGTCCACCAAGGTTCCCTGGTAGACGGTGAAGGATTT
GCAGGCAACTCACCCAGAAGGCCTTTCGGTACATTAAAATCCCAGCAAGGAGACCTAAGC
ATCTGCTTTGCCCAGGCCCGCATCTGTCAAATAAATTCTTGTGAAACCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               PG1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               PG1_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               9-123, + strand, RNAz p=0.923301

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               9-123, + strand, RNAz p=0.923301

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004345, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004345, +

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               9-219, gnl|bosTau2|chr22 (40887680-40887890)
               

               
               9-219, gnl|canFam2|chr20 (43791968-43791746)
               

               
               9-219, gnl|echTel1|scaffold_215749 (4596-4822)
               

               
               9-219, gnl|hg17|chr3 (48239925-48240150)
               

               
               9-219, gnl|Hg17|chr3 (48239996-48240207)
               

               
               9-219, gnl|mm7|chr9 (109546148-109545930)
               

               
               9-219, gnl|Mm7|chr9 (109546073-109545871)
               

               
               9-219, gnl|oryCun1|scaffold_100091 (1766-1545)
               

               
               9-219, gnl|panTro1|chr2 (49719314-49719539)
               

               
               9-219, gnl|rheMac2|chr2 (88272539-88272314)
               

               
               9-219, gnl|rn3|chr8 (114236260-114236039)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-219, gnl|bosTau2|chr22 (40887680-40887890)
               

               
               9-219, gnl|canFam2|chr20 (43791968-43791746)
               

               
               9-219, gnl|echTel1|scaffold_215749 (4596-4822)
               

               
               9-219, gnl|hg17|chr3 (48239925-48240150)
               

               
               9-219, gnl|Hg17|chr3 (48239996-48240207)
               

               
               9-219, gnl|mm7|chr9 (109546148-109545930)
               

               
               9-219, gnl|Mm7|chr9 (109546073-109545871)
               

               
               9-219, gnl|oryCun1|scaffold_100091 (1766-1545)
               

               
               9-219, gnl|panTro1|chr2 (49719314-49719539)
               

               
               9-219, gnl|rheMac2|chr2 (88272539-88272314)
               

               
               9-219, gnl|rn3|chr8 (114236260-114236039)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               nbm (9.73381)
               

               
               nca (1.64249)
               

               
               fty (0.351679)
               

               
               eli (0.303628)
               

               
               cag (0.302389)
               

               
               cly (0.241284)
               

               
               med (0.232504)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (9.73381)
               

               
               nca (1.64249)
               

               
               fty (0.351679)
               

               
               eli (0.303628)
               

               
               cag (0.302389)
               

               
               cly (0.241284)
               

               
               med (0.232504)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)

	9-219, gnl\|bosTau2\|chr22 (40887680-40887890)
	9-219, gnl\|canFam2\|chr20 (43791968-43791746)
	9-219, gnl\|echTel1\|scaffold_215749 (4596-4822)
	9-219, gnl\|hg17\|chr3 (48239925-48240150)
	9-219, gnl\|Hg17\|chr3 (48239996-48240207)
	9-219, gnl\|mm7\|chr9 (109546148-109545930)
	9-219, gnl\|Mm7\|chr9 (109546073-109545871)
	9-219, gnl\|oryCun1\|scaffold_100091 (1766-1545)
	9-219, gnl\|panTro1\|chr2 (49719314-49719539)
	9-219, gnl\|rheMac2\|chr2 (88272539-88272314)
	9-219, gnl\|rn3\|chr8 (114236260-114236039)

	nbm (9.73381)
	nca (1.64249)
	fty (0.351679)
	eli (0.303628)
	cag (0.302389)
	cly (0.241284)
	med (0.232504)
	fli (0.202881)
	nlu (0.191681)
	nco (0.161734)
	lnt (0.142308)