Non-Coding RNA Search

Ss1.1-Pig4-TMW8018F21.3

Sequence:


               
               CCTCATAAATGCAATGATTGTGGTGAACTTTTCACTTACCATTCAGTGCTCATTCGACAC
CGGAGGGTCCATACTGGGGAAAAACCCTACAGCTGCAGTGAGTGTGGGAAATCTTTCAGC
CACAGGGCTAATTTAACTAAACATCAGAGAACTCATACTAGAATCCTCTTTGAATGCAGT
GAATGCAAGAAAGCCTCCACAGAAAGTGCATCCCTTGCAATACATCAGAGGATTCACATT
GGAGAGAGACCCTATGAGTGCAGCGAGTGTGGGAAAGGTTTTAATCGAAGCACACACCTC
GTGCAGCACCAGCTGATTCATACAGGAGTAAAGCCTTATGAGTGTAATGAGTGTGATAAA
GCCTTCATTCATTCGTCAGCACTCATTAAACATCAAAGAACTCACACTGGAGAGAAACCA
TATAAGTGTCAGGAATGTGGGAAAGCCTTCAGCCATTGCTCATCCCTTACTAAACATCAG
AGAGTTCATACTGGAGAAAAACCATATGAATGTAGTGAATGTGGGAAAACCTTTAGTCAG
AGCACACATCTTGTTCAACATCAGAGAATTCACACCGGAGAGAAACCCTACGAGTGTAAT
GAATGTGGGAAAACCTTCAGCCGGAGCTCAAATTTTGCTAAACATCAAAGAATTCATATA
GGAAAGAAGCCATACAAATGTAATGAATGTGGGAAAGCCTTCATTCATTCATCAGCTCTT
ATCCAGCACCAGAGAACTCATACTGGAGAGAAACCCTATAGGTGTAACGAATGTGGGAAA
AGCTTTAAGTGCAGTTCATCTCTTATCAGACATCAAAAGATTCACACTGAAGAGCAGCCC
TGAAAAATCACTGAGTGTGAAGAAATGGTCCCCGTCAAGAAGAACTGAAGCAGCCATGAG
GCACAAAGAACACCTTCGAGTAGCATACGGGAATGGTCATGGGACAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCATAAATGCAATGATTGTGGTGAACTTTTCACTTACCATTCAGTGCTCATTCGACAC
CGGAGGGTCCATACTGGGGAAAAACCCTACAGCTGCAGTGAGTGTGGGAAATCTTTCAGC
CACAGGGCTAATTTAACTAAACATCAGAGAACTCATACTAGAATCCTCTTTGAATGCAGT
GAATGCAAGAAAGCCTCCACAGAAAGTGCATCCCTTGCAATACATCAGAGGATTCACATT
GGAGAGAGACCCTATGAGTGCAGCGAGTGTGGGAAAGGTTTTAATCGAAGCACACACCTC
GTGCAGCACCAGCTGATTCATACAGGAGTAAAGCCTTATGAGTGTAATGAGTGTGATAAA
GCCTTCATTCATTCGTCAGCACTCATTAAACATCAAAGAACTCACACTGGAGAGAAACCA
TATAAGTGTCAGGAATGTGGGAAAGCCTTCAGCCATTGCTCATCCCTTACTAAACATCAG
AGAGTTCATACTGGAGAAAAACCATATGAATGTAGTGAATGTGGGAAAACCTTTAGTCAG
AGCACACATCTTGTTCAACATCAGAGAATTCACACCGGAGAGAAACCCTACGAGTGTAAT
GAATGTGGGAAAACCTTCAGCCGGAGCTCAAATTTTGCTAAACATCAAAGAATTCATATA
GGAAAGAAGCCATACAAATGTAATGAATGTGGGAAAGCCTTCATTCATTCATCAGCTCTT
ATCCAGCACCAGAGAACTCATACTGGAGAGAAACCCTATAGGTGTAACGAATGTGGGAAA
AGCTTTAAGTGCAGTTCATCTCTTATCAGACATCAAAAGATTCACACTGAAGAGCAGCCC
TGAAAAATCACTGAGTGTGAAGAAATGGTCCCCGTCAAGAAGAACTGAAGCAGCCATGAG
GCACAAAGAACACCTTCGAGTAGCATACGGGAATGGTCATGGGACAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61814919|ref|XP_602403.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61814919|ref|XP_602403.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-754, gnl|bosTau2|chr11 (74554931-74554175)
               

               
               1-754, gnl|Hg17|chr9 (127286275-127287031)
               

               
               1-754, gnl|Mm7|chr11 (62796133-62795385)
               


               
               5-753, gnl|bosTau2|chr10 (8996752-8996001)
               

               
               5-753, gnl|Hg17|chr19 (42818557-42817755)
               

               
               5-753, gnl|Mm7|chr2 (127310183-127309516)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-754, gnl|bosTau2|chr11 (74554931-74554175)
               

               
               1-754, gnl|Hg17|chr9 (127286275-127287031)
               

               
               1-754, gnl|Mm7|chr11 (62796133-62795385)
               


               
               5-753, gnl|bosTau2|chr10 (8996752-8996001)
               

               
               5-753, gnl|Hg17|chr19 (42818557-42817755)
               

               
               5-753, gnl|Mm7|chr2 (127310183-127309516)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               gul (0.177588)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)

	1-754, gnl\|bosTau2\|chr11 (74554931-74554175)
	1-754, gnl\|Hg17\|chr9 (127286275-127287031)
	1-754, gnl\|Mm7\|chr11 (62796133-62795385)

	5-753, gnl\|bosTau2\|chr10 (8996752-8996001)
	5-753, gnl\|Hg17\|chr19 (42818557-42817755)
	5-753, gnl\|Mm7\|chr2 (127310183-127309516)