Non-Coding RNA Search

Ss1.1-Pig4-TMW8018G09.3.5

Sequence:


               
               GAATAATAGTCCTGCTCTGAAAAGCTAATCTTCAAAATTAACAGACTAATTCCAGTATAA
AAAATGTTTTTTGATAAAAGTTTTTTGTTTTCTATTAAAAAGCACGGAAGAAAATGTTGA
AGTTAAAAGAATCAAGACATGGAAAACTGCTGATTTTGAATTCCATGGCTGAAGTAAATG
ATAACCTATTTGACAGTATTAATAAAGTATTTTATAGGGTGAGCCATTTTACAAAGGAAA
AAGTTTAAATGGCTAGATCATACTCCATAATTTGGAGGTAACAGTTTAATGCAATAAATT
TTTTTAACAGCTTTGGATACAGTTCAAATTTTTACATCTTTTTTTTTTTTTTAAACCAAT
TAGTATAAAGGCATTTTGGAGGTCACAACAGGATTGTTAGATACTACTTTAACTTCCAAA
TTACTGTTTGAAGTAAATAGTGCTGATCAGTTCTGAACTTTTGAAGGTATTATAGACCAT
GAACAAACACCTTTGATATTAGCTATGTCACTGAAGTTGTGTATCTTCACTCACAGGATT
GGGCAAATTTGGGTTATGTGGAAACTGGAAATATTAGTGGGAGTTTGTTTAGCATTTGTT
TAAATGTTTTCCACAGTATCATGTCTATTTGTTTTTTGAAGGAAAATTGTTTTTTTCTTT
AAGGAATTCCTATCAGTCAGAGCATTTTAGCCTGTTTCTAGTCTAAGAAATTATGTGGTA
ATTTAAGAAAGCTGATAGAAAGTTCTTTGCACTTTAATGGACTGAAGATTTTTTTGGTGA
GAGTTAAGTCCATAAAAATAAATGAGGTTTTTCACAGGTAAGAGTAAAAAGTAATGAATT
CTGAGAGTTCTTAAATAGCACACTACTTGGCAAGACTTTAAATTTGTTAAAATTCTTTCA
CTGTTTGTTAGAAACAACTTGTAAATTCCAGTTTGAAGTTTGAAATCTTAATATGTGGTT
AAGTCCATGACTTGTAAAACACTGAGTAACTTTCTAATCAATGGAAATAATAGTGCAAGA
AAAAAGAAAATTTTTTTTCTAGTAAGTCTAACTTTGATGATGTAGTGGATAAAAGAATGA
TTAATTATTGGTAAGTTGACATTGAATTTAATTCTTGAGCCAGAGGTAAATCACTTGAAT
ATTATGAGTGGTATCTGTGTAACCTATTTGGTTAATAATTAGATTTATAGTGTGCTTTTT
TATGTTGCAGTTTGGATTAAAACCCTTAAGCACACCATTTCTCTTGGTGGTATATAGTCT
TCAAACTAACAAGCCTGAGAATCTTGTTAGTGACTGCCTCTTTAGGAGTATGGGACCAGA
CGGTACCCATGTATTTTTACCCCATGGGTCATTCTAGACTAGGGACCACTTAAGGAACCC
TCAGAAGCTAACTCCTATCATAGGAGCTTGCTTAGTGCAAACTAGTAGTGTAATAAAATA
TTGAGGGGGAGTACCCAGGGTGTTAATAGATTTTAGAATGACATTTTAACTCTGGTAACT
ATTTCTTTGGCTTGGTGACCTTGATAGAGGGATTGTAACCCCTGGAAATAATCTCATTGA
GGTTAGACCACCTGCCTAAATTTAATCTTACTTTTGTGTATTTCTTTCCTGAGTTGGACT
TAAGTTACTGTATTTTCTCATTTTTATTACTGTACAGTTTCTTTACCTTTCTAGTACAAA
TGTGTATATAAGATGTAAATATAAGGAATTCACTAAAAACCACTATTAACAATGATTCTG
TAAATAAAATCTGTAAGCAGAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATAATAGTCCTGCTCTGAAAAGCTAATCTTCAAAATTAACAGACTAATTCCAGTATAA
AAAATGTTTTTTGATAAAAGTTTTTTGTTTTCTATTAAAAAGCACGGAAGAAAATGTTGA
AGTTAAAAGAATCAAGACATGGAAAACTGCTGATTTTGAATTCCATGGCTGAAGTAAATG
ATAACCTATTTGACAGTATTAATAAAGTATTTTATAGGGTGAGCCATTTTACAAAGGAAA
AAGTTTAAATGGCTAGATCATACTCCATAATTTGGAGGTAACAGTTTAATGCAATAAATT
TTTTTAACAGCTTTGGATACAGTTCAAATTTTTACATCTTTTTTTTTTTTTTAAACCAAT
TAGTATAAAGGCATTTTGGAGGTCACAACAGGATTGTTAGATACTACTTTAACTTCCAAA
TTACTGTTTGAAGTAAATAGTGCTGATCAGTTCTGAACTTTTGAAGGTATTATAGACCAT
GAACAAACACCTTTGATATTAGCTATGTCACTGAAGTTGTGTATCTTCACTCACAGGATT
GGGCAAATTTGGGTTATGTGGAAACTGGAAATATTAGTGGGAGTTTGTTTAGCATTTGTT
TAAATGTTTTCCACAGTATCATGTCTATTTGTTTTTTGAAGGAAAATTGTTTTTTTCTTT
AAGGAATTCCTATCAGTCAGAGCATTTTAGCCTGTTTCTAGTCTAAGAAATTATGTGGTA
ATTTAAGAAAGCTGATAGAAAGTTCTTTGCACTTTAATGGACTGAAGATTTTTTTGGTGA
GAGTTAAGTCCATAAAAATAAATGAGGTTTTTCACAGGTAAGAGTAAAAAGTAATGAATT
CTGAGAGTTCTTAAATAGCACACTACTTGGCAAGACTTTAAATTTGTTAAAATTCTTTCA
CTGTTTGTTAGAAACAACTTGTAAATTCCAGTTTGAAGTTTGAAATCTTAATATGTGGTT
AAGTCCATGACTTGTAAAACACTGAGTAACTTTCTAATCAATGGAAATAATAGTGCAAGA
AAAAAGAAAATTTTTTTTCTAGTAAGTCTAACTTTGATGATGTAGTGGATAAAAGAATGA
TTAATTATTGGTAAGTTGACATTGAATTTAATTCTTGAGCCAGAGGTAAATCACTTGAAT
ATTATGAGTGGTATCTGTGTAACCTATTTGGTTAATAATTAGATTTATAGTGTGCTTTTT
TATGTTGCAGTTTGGATTAAAACCCTTAAGCACACCATTTCTCTTGGTGGTATATAGTCT
TCAAACTAACAAGCCTGAGAATCTTGTTAGTGACTGCCTCTTTAGGAGTATGGGACCAGA
CGGTACCCATGTATTTTTACCCCATGGGTCATTCTAGACTAGGGACCACTTAAGGAACCC
TCAGAAGCTAACTCCTATCATAGGAGCTTGCTTAGTGCAAACTAGTAGTGTAATAAAATA
TTGAGGGGGAGTACCCAGGGTGTTAATAGATTTTAGAATGACATTTTAACTCTGGTAACT
ATTTCTTTGGCTTGGTGACCTTGATAGAGGGATTGTAACCCCTGGAAATAATCTCATTGA
GGTTAGACCACCTGCCTAAATTTAATCTTACTTTTGTGTATTTCTTTCCTGAGTTGGACT
TAAGTTACTGTATTTTCTCATTTTTATTACTGTACAGTTTCTTTACCTTTCTAGTACAAA
TGTGTATATAAGATGTAAATATAAGGAATTCACTAAAAACCACTATTAACAATGATTCTG
TAAATAAAATCTGTAAGCAGAGCA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               185-300, - strand, RNAz p=0.743092
               

               
               373-478, + strand, RNAz p=0.539313
               

               
               1134-1273, - strand, RNAz p=0.710923

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               185-300, - strand, RNAz p=0.743092
               

               
               373-478, + strand, RNAz p=0.539313
               

               
               1134-1273, - strand, RNAz p=0.710923

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB011180, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB011180, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1762, gnl|bosTau2|chr18 (24631642-24633457)
               

               
               1-1762, gnl|Hg17|chr10 (96282816-96285674)
               

               
               1-1762, gnl|Mm7|chr19 (38618596-38620343)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1762, gnl|bosTau2|chr18 (24631642-24633457)
               

               
               1-1762, gnl|Hg17|chr10 (96282816-96285674)
               

               
               1-1762, gnl|Mm7|chr19 (38618596-38620343)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               amn (0.417711)
               

               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	185-300, - strand, RNAz p=0.743092
	373-478, + strand, RNAz p=0.539313
	1134-1273, - strand, RNAz p=0.710923

	1-1762, gnl\|bosTau2\|chr18 (24631642-24633457)
	1-1762, gnl\|Hg17\|chr10 (96282816-96285674)
	1-1762, gnl\|Mm7\|chr19 (38618596-38620343)

	amn (0.417711)
	mgp (0.230681)
	gul (0.177588)
	fbs (0.175346)
	mga (0.160205)
	fco (0.157208)
	lin (0.145603)
	hyp (0.142837)
	pty (0.142714)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	bla (0.124347)
	spc (0.113366)