Non-Coding RNA Search

Ss1.1-Pig4-TMW8018G16.5

Sequence:


               
               CATACTCTTTTTTCAATGTGATTGTGCCGTGTCCTGGATTTCCACTATATTTTGGATGTG
TAGAAAAGTGTGAACTATTTTTATGAATCATATTTGAAATATTAGAAGTGGGTTTGGGAT
AGAAATGGCATTGTTCACAGTTGGCAGTTGGTGTTATTTGAGGAAAACAGATGCCTGTCT
GCCCAAAACAGCACCCCAGGTGGTTCCTACTCCTGAAATTTTAGCATTCATTTCACTCCT
TGAAAGATTAAAGCACTTACCCAAGTGTAGTGATGAAATTAACTAGAAGATACAGCACTG
GTTTATGTTACTAACTTTTGCCACCCACTTGCTGTAGGTAAAATAAGACTGATAACTGAA
CAGTAAAGATTACTTCTGTTCAATGGGGGCAGAAGGGATAGTAGAAAACAGGTACTGCTA
GTCAGTCACAGGTACAGCATTGTGAGAGAACCATCGGGATGTGAAAAATCCCCCAAATGG
GGTGGGGAGAATTCTACCTCACAGTTGTGCATAAGGGATAGCTATGTTTTTTGCAGGACA
TTTTAGCCTTTACAAATCATATTTTCAATATTGTCTTTTTATTCAGTACCACCCAGCTAT
AGTTATTTCACACCGCAGTGATTTTTATCCCCTTTGTCTTATCCTTCCCTCCTATTCTAC
TACAAATAGCAGTTATCTGTATAAGCCTATAAAGTTATTGTCATATGTATGTTTTCAGTG
TTTGTGTTCAAAAATATCTGTGTATAGTTCATCCAGTCTTTACTATTTGATTTTTAAGGG
CTGGGATATTTGGCTTCTACTGTAAATCCTTATAATGTTCCATACACATTGTAAATGCAA
TAAAAATGTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATACTCTTTTTTCAATGTGATTGTGCCGTGTCCTGGATTTCCACTATATTTTGGATGTG
TAGAAAAGTGTGAACTATTTTTATGAATCATATTTGAAATATTAGAAGTGGGTTTGGGAT
AGAAATGGCATTGTTCACAGTTGGCAGTTGGTGTTATTTGAGGAAAACAGATGCCTGTCT
GCCCAAAACAGCACCCCAGGTGGTTCCTACTCCTGAAATTTTAGCATTCATTTCACTCCT
TGAAAGATTAAAGCACTTACCCAAGTGTAGTGATGAAATTAACTAGAAGATACAGCACTG
GTTTATGTTACTAACTTTTGCCACCCACTTGCTGTAGGTAAAATAAGACTGATAACTGAA
CAGTAAAGATTACTTCTGTTCAATGGGGGCAGAAGGGATAGTAGAAAACAGGTACTGCTA
GTCAGTCACAGGTACAGCATTGTGAGAGAACCATCGGGATGTGAAAAATCCCCCAAATGG
GGTGGGGAGAATTCTACCTCACAGTTGTGCATAAGGGATAGCTATGTTTTTTGCAGGACA
TTTTAGCCTTTACAAATCATATTTTCAATATTGTCTTTTTATTCAGTACCACCCAGCTAT
AGTTATTTCACACCGCAGTGATTTTTATCCCCTTTGTCTTATCCTTCCCTCCTATTCTAC
TACAAATAGCAGTTATCTGTATAAGCCTATAAAGTTATTGTCATATGTATGTTTTCAGTG
TTTGTGTTCAAAAATATCTGTGTATAGTTCATCCAGTCTTTACTATTTGATTTTTAAGGG
CTGGGATATTTGGCTTCTACTGTAAATCCTTATAATGTTCCATACACATTGTAAATGCAA
TAAAAATGTTTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               306-418, + strand, RNAz p=0.986015

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               306-418, + strand, RNAz p=0.986015

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-850, gnl|bosTau2|chr2 (8770355-8771223)
               

               
               1-850, gnl|Hg17|chr2 (179793620-179792761)
               

               
               1-850, gnl|Mm7|chr2 (77024974-77024153)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-850, gnl|bosTau2|chr2 (8770355-8771223)
               

               
               1-850, gnl|Hg17|chr2 (179793620-179792761)
               

               
               1-850, gnl|Mm7|chr2 (77024974-77024153)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sme (0.305437)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

	1-850, gnl\|bosTau2\|chr2 (8770355-8771223)
	1-850, gnl\|Hg17\|chr2 (179793620-179792761)
	1-850, gnl\|Mm7\|chr2 (77024974-77024153)