Non-Coding RNA Search

Ss1.1-Pig4-TMW8018H01.5

Sequence:


               
               TGGGTTCTGTTGGGGGCCCCACCCCCCTTGTCTCCTGGGACCGGCCCAGTGTGGGGGCAG
ATGAGGCAGCTGGAACCCCCGCCCCACTGCTGACTCGGCTGGCCCAGCACATGAAGTGGC
CGTCTGTCTCGTCCCTGGACTCTGCCCTGGACGGCACCCCTACCCTACAGAGTCCGGTTA
ACCCCAGCCACCTCTCACCCCCCACTTCCTCCCCGAAGCCTTCTCGAGGTCACCGCCGAT
CAGCCTCGTGTGGCTCCCCACTCAGTGGGGGAGCAGATGGGGCCTCCAGGGGGGCTGGAT
GTGGGTCTGGGCCAGGGGCGTCTGATTGCCGGATCATCCGCGTCCAGATGGAGCTGGGGG
AAGACGGCAGTGTCTACAAGAGCATCTTGGTAACAAGCCAGGACAAAGCTCCAAGTGTCA
TCAGTCGTGTCCTTAAGAAAAACAATCGTGATTCTGCAGTGGCTTCAGAGTATGAGCTGG
TGCAGCTGCTACCAGGGGAGCGAGAGCTGACCATCCCCGCCTCGGCCAACGTCTTCTACG
CCATGGATGGTGCGTCCCATGATTTCCTCCTGCGGCAGCGGCGCAGGCCCTCTACTGCTA
CGCTGGGCCCCTCTGCCTCGGGGACGCCCCCGAGCGCGGGGGGAGGGGGCTCCTTCCCCA
GGATCAAAGCCACGGGGAGGAAGATTGCCCGGGCACTGTTCTGAGGGGAGAGCCTCGGCT
CACAGAACTCACTGCGGCCATACCAGACGGGGGCGCTACGTTGGGAGAAAATCCAGCAAG
GCGGCCAACTACCCTGGGGCAGTGAAGTGCTGCCAGGTTACCAGGCAGCCAAGACCCAGC
CTGTGGGACTGGTCACCTCGGATCCCAAGGTGGACAACCTGTGTGTAGCTCTTCCCGATT
TCCAAAAGTGTGGCACACAGCTGGTTCCTGACACCTGGCCACACCCTCGCATGCCCAGGC
CCAAGAAGGGCCTAGAAGTGGGAGAAGGGAAAAGCCTAGAGGCTCTGAGCCCCAGGCAAA
GGGAATGGCAAGTAGGAGTTCCTTTTCCTGCTCTAGGGATTCCTGTCACTGTGACAACAC
TAATAAACCAAAACACTACCTGAAAAAAAAAAAAAACAGCGTGGGCCACTGATGCTGCGG
GGGCGGGGGCAGGGGGGCAGGCTGAGAGTGGATACTGTGGAATAAGAGGGGCCGTGTTTT
CCGTCCATGAAGAGCTGAAAGCGAGGAGCTGCTGGAGATGGTCTCCTCAGTATGGTTTCT
GCCTCCCTGGCAACCTCTCCATCCCTTTATTTGCTCTTAAACTTTTCTCCTCAGCTGTTA
CAAAACCTTGTCAAGTTCTAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGTTCTGTTGGGGGCCCCACCCCCCTTGTCTCCTGGGACCGGCCCAGTGTGGGGGCAG
ATGAGGCAGCTGGAACCCCCGCCCCACTGCTGACTCGGCTGGCCCAGCACATGAAGTGGC
CGTCTGTCTCGTCCCTGGACTCTGCCCTGGACGGCACCCCTACCCTACAGAGTCCGGTTA
ACCCCAGCCACCTCTCACCCCCCACTTCCTCCCCGAAGCCTTCTCGAGGTCACCGCCGAT
CAGCCTCGTGTGGCTCCCCACTCAGTGGGGGAGCAGATGGGGCCTCCAGGGGGGCTGGAT
GTGGGTCTGGGCCAGGGGCGTCTGATTGCCGGATCATCCGCGTCCAGATGGAGCTGGGGG
AAGACGGCAGTGTCTACAAGAGCATCTTGGTAACAAGCCAGGACAAAGCTCCAAGTGTCA
TCAGTCGTGTCCTTAAGAAAAACAATCGTGATTCTGCAGTGGCTTCAGAGTATGAGCTGG
TGCAGCTGCTACCAGGGGAGCGAGAGCTGACCATCCCCGCCTCGGCCAACGTCTTCTACG
CCATGGATGGTGCGTCCCATGATTTCCTCCTGCGGCAGCGGCGCAGGCCCTCTACTGCTA
CGCTGGGCCCCTCTGCCTCGGGGACGCCCCCGAGCGCGGGGGGAGGGGGCTCCTTCCCCA
GGATCAAAGCCACGGGGAGGAAGATTGCCCGGGCACTGTTCTGAGGGGAGAGCCTCGGCT
CACAGAACTCACTGCGGCCATACCAGACGGGGGCGCTACGTTGGGAGAAAATCCAGCAAG
GCGGCCAACTACCCTGGGGCAGTGAAGTGCTGCCAGGTTACCAGGCAGCCAAGACCCAGC
CTGTGGGACTGGTCACCTCGGATCCCAAGGTGGACAACCTGTGTGTAGCTCTTCCCGATT
TCCAAAAGTGTGGCACACAGCTGGTTCCTGACACCTGGCCACACCCTCGCATGCCCAGGC
CCAAGAAGGGCCTAGAAGTGGGAGAAGGGAAAAGCCTAGAGGCTCTGAGCCCCAGGCAAA
GGGAATGGCAAGTAGGAGTTCCTTTTCCTGCTCTAGGGATTCCTGTCACTGTGACAACAC
TAATAAACCAAAACACTACCTGAAAAAAAAAAAAAACAGCGTGGGCCACTGATGCTGCGG
GGGCGGGGGCAGGGGGGCAGGCTGAGAGTGGATACTGTGGAATAAGAGGGGCCGTGTTTT
CCGTCCATGAAGAGCTGAAAGCGAGGAGCTGCTGGAGATGGTCTCCTCAGTATGGTTTCT
GCCTCCCTGGCAACCTCTCCATCCCTTTATTTGCTCTTAAACTTTTCTCCTCAGCTGTTA
CAAAACCTTGTCAAGTTCTAGCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4558185|pdb|1RLF|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4558185|pdb|1RLF|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               103-298, - strand, RNAz p=0.998678
               

               
               895-1056, - strand, RNAz p=0.999398

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               103-298, - strand, RNAz p=0.998678
               

               
               895-1056, - strand, RNAz p=0.999398

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               103-391, gnl|bosTau2|chr23 (5830571-5830274)
               

               
               103-391, gnl|Hg17|chr6 (33369066-33368769)
               

               
               103-391, gnl|Mm7|chr17 (32013765-32014065)
               


               
               503-753, gnl|bosTau2|chr23 (5829515-5829247)
               

               
               503-753, gnl|Hg17|chr6 (33368070-33367805)
               

               
               503-753, gnl|Mm7|chr17 (32015093-32015352)
               


               
               755-1336, gnl|bosTau2|chr23 (5829222-5828614)
               

               
               755-1336, gnl|Hg17|chr6 (33367778-33367215)
               

               
               755-1336, gnl|Mm7|chr17 (32015368-32016085)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-391, gnl|bosTau2|chr23 (5830571-5830274)
               

               
               103-391, gnl|Hg17|chr6 (33369066-33368769)
               

               
               103-391, gnl|Mm7|chr17 (32013765-32014065)
               


               
               503-753, gnl|bosTau2|chr23 (5829515-5829247)
               

               
               503-753, gnl|Hg17|chr6 (33368070-33367805)
               

               
               503-753, gnl|Mm7|chr17 (32015093-32015352)
               


               
               755-1336, gnl|bosTau2|chr23 (5829222-5828614)
               

               
               755-1336, gnl|Hg17|chr6 (33367778-33367215)
               

               
               755-1336, gnl|Mm7|chr17 (32015368-32016085)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               mcp (0.341297)
               

               
               fhi (0.339155)
               

               
               cga (0.279096)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.341297)
               

               
               fhi (0.339155)
               

               
               cga (0.279096)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	103-298, - strand, RNAz p=0.998678
	895-1056, - strand, RNAz p=0.999398

	103-391, gnl\|bosTau2\|chr23 (5830571-5830274)
	103-391, gnl\|Hg17\|chr6 (33369066-33368769)
	103-391, gnl\|Mm7\|chr17 (32013765-32014065)

	503-753, gnl\|bosTau2\|chr23 (5829515-5829247)
	503-753, gnl\|Hg17\|chr6 (33368070-33367805)
	503-753, gnl\|Mm7\|chr17 (32015093-32015352)

	755-1336, gnl\|bosTau2\|chr23 (5829222-5828614)
	755-1336, gnl\|Hg17\|chr6 (33367778-33367215)
	755-1336, gnl\|Mm7\|chr17 (32015368-32016085)

	mcp (0.341297)
	fhi (0.339155)
	cga (0.279096)
	ece (0.229305)
	nms (0.213858)
	tes (0.207814)
	fli (0.202881)
	nep (0.183925)
	ill (0.175593)
	fbs (0.175346)
	eye (0.170503)
	nco (0.161734)
	lnt (0.142308)
	cov (0.132153)
	eep (0.122564)
	cly (0.120642)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)